Factsheet for PGSC0003DMT400020747

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079270.2.1	Tomato	endoplasmic reticulum, nucleus	88.74	88.74
VIT_13s0067g01510.t01	Wine grape	cytosol	66.98	65.73
Os05t0470800-01	Rice	mitochondrion	62.02	62.5
Zm00001d010590_P001	Maize	plasma membrane	61.83	61.48
CDY00993	Canola	cytosol	57.63	61.01
TraesCS2A01G102400.1	Wheat	mitochondrion	32.44	60.71
TraesCS1B01G305000.1	Wheat	cytosol	59.16	60.55
TraesCS2D01G101900.1	Wheat	cytosol	59.92	60.38
EES19675	Sorghum	cytosol	61.07	60.38
AT5G05520.1	Thale cress	cytosol	60.31	60.31
TraesCS2B01G119500.1	Wheat	mitochondrion	57.06	60.16
CDY00721	Canola	nucleus	57.82	60.12
TraesCS1A01G296200.1	Wheat	cytosol	59.54	60.12
TraesCS1D01G295900.1	Wheat	cytosol	59.54	59.66
KRG97698	Soybean	nucleus	60.11	59.43
Bra001389.1-P	Field mustard	nucleus	57.63	59.22
KRH31173	Soybean	nucleus	59.54	59.09
AT3G11070.1	Thale cress	nucleus	58.59	59.04
CDX73892	Canola	nucleus	57.44	59.02
Bra034868.1-P	Field mustard	cytosol	56.11	58.57
CDY08552	Canola	cytosol	56.11	58.57
CDX70145	Canola	cytosol	58.4	58.17
KRH73273	Soybean	nucleus	58.97	58.08
Bra009118.1-P	Field mustard	nucleus	58.4	58.06
GSMUA_Achr5P14260_001	Banana	cytosol	59.35	58.02
EES01699	Sorghum	cytosol	58.97	57.76
CDX98848	Canola	cytosol	57.82	57.6
GSMUA_Achr4P18790_001	Banana	cytosol	60.88	57.58
Zm00001d012467_P001	Maize	plasma membrane	56.87	56.02
KRH14921	Soybean	cytosol	56.3	55.14
TraesCS3B01G382000.1	Wheat	cytosol	54.2	53.89
TraesCS3A01G349400.1	Wheat	cytosol	53.82	53.61
TraesCS3D01G343400.1	Wheat	cytosol	53.24	53.24
HORVU1Hr1G070610.1	Barley	cytosol, mitochondrion, nucleus	59.35	53.16
HORVU3Hr1G087800.9	Barley	cytosol	55.15	50.17
Zm00001d041347_P001	Maize	cytosol, peroxisome, plastid	29.77	49.06
TraesCS4B01G365800.1	Wheat	plastid	25.95	47.55
EES09088	Sorghum	cytosol	46.37	47.28
EES16490	Sorghum	cytosol	46.37	47.0
TraesCS5D01G158200.2	Wheat	cytosol	45.8	46.6
TraesCS5A01G152900.1	Wheat	cytosol	45.61	46.41
TraesCS5B01G151700.1	Wheat	cytosol	45.42	46.21
Zm00001d023220_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	44.27	45.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400020747	EnsemblPlantsGene:PGSC0003DMG400008029	EntrezGene:102579885	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	PANTHER:PTHR12815	PANTHER:PTHR12815:SF15
PFAM:PF01103	PFAM:PF07244	PGSC:PGSC0003DMG400008029	RefSeq:XP_006354915.1	SEG:seg	UniParc:UPI00029657CC
UniProt:M1AE02	MapMan:23.2.2.1	:	:	:	:

Description

Sorting and assembly machinery (Sam50) protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008029]

Coordinates

chr4:-:68592601..68597693

Molecular Weight (calculated)

58033.6 Da

IEP (calculated)

5.590

GRAVY (calculated)

-0.337

Length

524 amino acids

Sequence
(BLAST)

001: MASSSKEPIS NPPIPDEDDE EEDDYDEIDE DDEEEEERER RPVTEESRVR SDRAKMENLF RRLSSERVPI RVHDVIIQGN TKTKESLIEA EMEALKNATT
101: LQELLKAASI ANARLQQLDI FDSVKITLDS GPPELPGTTN VVVEIVESEN PLTGSVGVFS KPEARAWSLE GSLKLKNLFG YGDIWDGSLA YGLDLTSEVS
201: AGVSLPRFKK LITPVTARLF LLSQDWLKFS SYKERALGLS LGLLSSRRHD LSYSLAWRTL ADPSQMSSRA VRRQLGHSLI SALKYTFKID RRNSPLRPTR
301: GYAFLSSSQI GGVLPDHRGL RFLRQELDFR YALPLGFYNA AFNIGISAGV TVPWGSGFLS HPTYLPEKFF LGGNSSPVCA LGGPSSLLGF KTRGLGPAEP
401: RRQVTENSTD ESSDASSAMD FVGGDLAVTA FADLSFDLPL RVLREAGIHG HAFACTGSLN KLTENAYKDL SLQKFKESFR ASAGFGVIVP TKLFRMEVNY
501: CYILKQQEHD RGKTGVQFSF SSSF

Best Arabidopsis Sequence Match ( AT5G05520.1 )
(BLAST)

001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR
101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS
201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL
301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG
401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY
501: CHILKKQEHD RAKSGFFMTF STSS

Arabidopsis Description

Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.