Factsheet for Bra001825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48882	Canola	nucleus	87.36	93.06
Bra023887.1-P	Field mustard	nucleus	69.54	70.08
Bra031274.1-P	Field mustard	nucleus	69.35	67.54
AT3G21320.1	Thale cress	nucleus	67.62	65.37
GSMUA_Achr6P33500_001	Banana	mitochondrion	23.37	32.8
GSMUA_Achr1P05150_001	Banana	nucleus	23.56	30.52
Os01t0566050-00	Rice	cytosol, nucleus	14.37	27.68
GSMUA_Achr2P08490_001	Banana	nucleus	18.77	24.02
Solyc06g062480.2.1	Tomato	plasma membrane	25.1	21.76
GSMUA_Achr1P14390_001	Banana	nucleus	22.03	21.62
Zm00001d039156_P001	Maize	nucleus	24.71	19.94
VIT_09s0002g02680.t01	Wine grape	nucleus	28.16	19.86
Bra007774.1-P	Field mustard	nucleus	22.41	19.76
PGSC0003DMT400012338	Potato	nucleus	24.71	19.75
KRH47177	Soybean	nucleus	25.67	19.73
KRH44225	Soybean	nucleus	26.05	19.24
OQU78543	Sorghum	nucleus	26.25	18.39
Bra034284.1-P	Field mustard	nucleus	20.88	18.11
HORVU1Hr1G094980.4	Barley	nucleus	26.25	17.91
TraesCS1B01G477400.1	Wheat	nucleus	26.05	17.69
Os06t0142600-01	Rice	nucleus	25.67	17.63
TraesCS1D01G451200.2	Wheat	nucleus	25.86	17.6
TraesCS1A01G443200.2	Wheat	nucleus	25.86	17.46
EES03137	Sorghum	nucleus	25.86	17.26
Zm00001d044232_P001	Maize	nucleus	25.1	17.21
GSMUA_Achr5P09620_001	Banana	unclear	22.99	14.71
Os01t0566100-01	Rice	nucleus	8.24	10.86

Protein Annotations

EnsemblPlants:Bra001825.1	EnsemblPlants:Bra001825.1-P	EnsemblPlantsGene:Bra001825	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	SEG:seg	UniParc:UPI000254063A
UniProt:M4CC95	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:	:

Description

AT3G21320 (E=1e-169) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR:AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA03:-:18674015..18675906

Molecular Weight (calculated)

58111.0 Da

IEP (calculated)

9.477

GRAVY (calculated)

-0.708

Length

522 amino acids

Sequence
(BLAST)

001: MGGMKDEAKR ITIHPLFQRV HLNDTGRNGK SMSLHKRSSL PSLTNKISDS SSTLSLSLPP PADNACLTTD QPEKNHFPSI CNTSPTTNLE EKLNKTATNY
101: PSPRESSVTN TKPSSIKQNE YHFKSLANLD SLKVPVLRRS QTDPQADTDL SVLQFCNSGG EADGSKAALN NLHIPELLLP QCFEDESQNE SLNVMKTQKK
201: PKTVPPCEQD VSDCSAIDSL SGISASSNDA ARVIGDKRFW KMRTYMINQQ KIFEAQVFEL HRLIMVQKMV ARSPNLVLKS KFNGDTMRLS PSHLPEMAAS
301: KVKKTITKKH KPVTEEYPEH MKPKLPLPSI NKDLMTPMWP QQLVPPPGNQ WLVPVMTPSE GLVYKPYTGP SPPPPSAFMV PFYGQDSLNT TLGFPVTQLS
401: HNYFPQPNAR TSLDQKSPFG QLQRWSNTSS HMTQAVPFSL KKSQESNESD VHGSTASSPP EKHKSDVLPL FPTKPTHHTD EYEQKQKPMC RAIRAIPHNS
501: TSASESAARS FRSIQEGLRS YD

Best Arabidopsis Sequence Match ( AT3G21320.1 )
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS

Arabidopsis Description

EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.