Factsheet for Zm00001d039156_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78543	Sorghum	nucleus	70.94	61.61
TraesCS1A01G443200.2	Wheat	nucleus	54.71	45.8
TraesCS1B01G477400.1	Wheat	nucleus	54.4	45.77
TraesCS1D01G451200.2	Wheat	nucleus	54.1	45.63
HORVU1Hr1G094980.4	Barley	nucleus	53.48	45.23
Zm00001d044232_P001	Maize	nucleus	44.82	38.11
GSMUA_Achr2P08490_001	Banana	nucleus	22.87	36.27
GSMUA_Achr6P33500_001	Banana	mitochondrion	20.71	36.02
GSMUA_Achr1P05150_001	Banana	nucleus	22.41	35.98
GSMUA_Achr1P14390_001	Banana	nucleus	29.06	35.34
Solyc08g065870.2.1	Tomato	nucleus	30.14	30.28
CDY66493	Canola	nucleus	25.5	29.84
VIT_04s0008g00660.t01	Wine grape	nucleus	33.38	29.79
CDY35321	Canola	nucleus	27.36	29.55
PGSC0003DMT400035914	Potato	nucleus	29.68	29.27
Bra034284.1-P	Field mustard	nucleus	27.2	29.24
PGSC0003DMT400065601	Potato	nucleus	28.59	29.04
CDX76735	Canola	nucleus	26.28	29.01
Bra007774.1-P	Field mustard	nucleus	26.43	28.89
Solyc11g070100.1.1	Tomato	nucleus	26.89	28.86
CDY11505	Canola	nucleus	26.28	28.72
KRH05522	Soybean	nucleus	31.53	28.61
KRH61488	Soybean	nucleus	30.76	27.87
KRH15494	Soybean	nucleus	17.62	27.27
VIT_09s0002g02680.t01	Wine grape	nucleus	30.76	26.89
KRH47177	Soybean	nucleus	27.82	26.51
PGSC0003DMT400075345	Potato	nucleus	29.37	26.43
CDY32422	Canola	nucleus, plastid	19.78	26.07
Solyc12g095900.1.1	Tomato	nucleus	29.06	26.04
KRH44225	Soybean	nucleus	27.51	25.18
CDY48882	Canola	nucleus	19.01	25.1
Bra001825.1-P	Field mustard	nucleus	19.94	24.71
Bra031274.1-P	Field mustard	nucleus	20.4	24.63
CDY51450	Canola	nucleus	20.4	24.63
CDY62750	Canola	nucleus	18.55	24.54
Bra023887.1-P	Field mustard	nucleus	19.63	24.52
AT2G25930.1	Thale cress	nucleus	26.28	24.46
CDY56915	Canola	nucleus	20.25	24.35
PGSC0003DMT400012338	Potato	nucleus	23.65	23.43
Solyc06g062480.2.1	Tomato	plasma membrane	21.79	23.42
AT3G21320.1	Thale cress	nucleus	19.47	23.33
GSMUA_Achr5P09620_001	Banana	unclear	29.37	23.28

Protein Annotations

EnsemblPlants:Zm00001d039156_P001	EnsemblPlants:Zm00001d039156_T001	EnsemblPlantsGene:Zm00001d039156	EntrezGene:103630791	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PANTHER:PTHR34281:SF5
ProteinID:AQK88857.1	SEG:seg	UniParc:UPI000221E7F0	UniProt:A0A1D6MDX8	MapMan:15.5.27	MapMan:27.1.6.3.2

Description

Protein EARLY FLOWERING 3

Coordinates

chr6:-:171181094..171184464

Molecular Weight (calculated)

69682.4 Da

IEP (calculated)

9.066

GRAVY (calculated)

-0.686

Length

647 amino acids

Sequence
(BLAST)

001: MRRGATKDDA APDKVMGPLF PRLHVNDTLK GGPRAPPRNK MALYEQFSVP SHRYSAAVPP APSPAPPWGA QRPASAVPST SASQVGGGDR PIFPLFRVPS
101: TEPVRSSDQT NANSNGQGAN GTIAESGRQR QSTHLKSKDT NAAGPPAEGN NSVGKKLAND DDFTVPSVLY SGMPPHSSQE KLTLFPTTSP CKSVPAKYSS
201: TDKRRLEGMD ASDVKSKGPS GIKEKEPVQV RIDLEDKETT PSFQVLNDKT WSPDPKLSSH MDRLKKQHAE AESYQIRTRN ENAVETQSPP KNGVSLLSKP
301: YVDRREQNGD SDLLGHGLRE TGVKRKRSHH DVEQNDDLSD SSVESLPGME ISPDDVVSAI GPKHFWKARR AIVNQQRVFA VQVFELHRLI KVQKLIAASP
401: HVLIEGDPCL GKSLAVSKKR LAGDVETQLE SAKNDDGVRP TQLEHSKEKT EANQPSPSQD EQAATNGDVA ASMHTPSDNK QKSWCIPAPP SQWLIPVMSP
501: SEGLVYKPYT GHCPPVGSLL APPFFASYPT SSSSTAGGDF MSSACGARLM SAPVYFPSFS MPAVSGSAVE QVSHVAASQH KRNSCSEAVL ASRDSEVQGS
601: SASSPASSET AAQPRVIRVV PHTARTASES AARIFRSIQM ERKQNDP

Best Arabidopsis Sequence Match ( AT3G21320.1 )
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS

Arabidopsis Description

EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.