Factsheet for VIT_04s0008g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035914	Potato	nucleus	44.28	48.93
KRH61488	Soybean	nucleus	48.14	48.88
Solyc08g065870.2.1	Tomato	nucleus	43.03	48.45
Solyc11g070100.1.1	Tomato	nucleus	39.17	47.1
GSMUA_Achr6P33500_001	Banana	mitochondrion	23.86	46.51
PGSC0003DMT400065601	Potato	nucleus	40.83	46.47
KRH05522	Soybean	nucleus	43.17	43.9
GSMUA_Achr1P05150_001	Banana	nucleus	24.0	43.18
PGSC0003DMT400075345	Potato	nucleus	41.38	41.72
GSMUA_Achr2P08490_001	Banana	nucleus	23.45	41.67
Solyc12g095900.1.1	Tomato	nucleus	40.97	41.14
Os01t0566050-00	Rice	cytosol, nucleus	15.17	40.59
GSMUA_Achr1P14390_001	Banana	nucleus	29.52	40.23
CDX76735	Canola	nucleus	32.41	40.1
CDY66493	Canola	nucleus	30.34	39.78
Bra007774.1-P	Field mustard	nucleus	32.41	39.7
CDY11505	Canola	nucleus	32.14	39.36
AT2G25930.1	Thale cress	nucleus	36.55	38.13
Bra034284.1-P	Field mustard	nucleus	30.34	36.54
CDY35321	Canola	nucleus	30.07	36.39
VIT_09s0002g02680.t01	Wine grape	nucleus	36.14	35.41
OQU78543	Sorghum	nucleus	35.17	34.23
KRH15494	Soybean	nucleus	19.31	33.49
Zm00001d039156_P001	Maize	nucleus	29.79	33.38
HORVU1Hr1G094980.4	Barley	nucleus	33.66	31.9
TraesCS1A01G443200.2	Wheat	nucleus	33.93	31.82
TraesCS1B01G477400.1	Wheat	nucleus	33.24	31.34
TraesCS1D01G451200.2	Wheat	nucleus	32.83	31.03
Os06t0142600-01	Rice	nucleus	32.41	30.92
Zm00001d044232_P001	Maize	nucleus	31.86	30.35
EES03137	Sorghum	nucleus	31.72	29.41
GSMUA_Achr5P09620_001	Banana	unclear	28.0	24.88
Os01t0566100-01	Rice	nucleus	12.55	22.98

Protein Annotations

EntrezGene:100255961	wikigene:100255961	MapMan:15.5.27	MapMan:27.1.6.3.2	EMBL:AM477020	ProteinID:CAN79509
ProteinID:CAN79509.1	ProteinID:CCB46540	ProteinID:CCB46540.1	UniProt:F6H384	EMBL:FN595231	GO:GO:0000003
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	EntrezGene:LOC100255961
wikigene:LOC100255961	PANTHER:PTHR34281	TIGR:TC55341	UniParc:UPI0001982E72	ArrayExpress:VIT_04s0008g00660	EnsemblPlantsGene:VIT_04s0008g00660
EnsemblPlants:VIT_04s0008g00660.t01	unigene:Vvi.15979	RefSeq:XP_002278577	RefSeq:XP_002278577.1	RefSeq:XP_010648311.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:595518..601744

Molecular Weight (calculated)

78424.9 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.713

Length

725 amino acids

Sequence
(BLAST)

001: MKRGKDEEKI MGPMFPRLHV NDTEKGGPRA PPRNKMALYE QLSVPSQRCN PGVMPLKSNN ASNLVPPASS SQGSGHERGV FFPHHISPST PTHLPEKLHA
101: RHSDAVILNT PLAQFEQRKK QGDEDDFRVP IFVHSGTEFH GRNQNSIDRE ILTPSSSTCL GHSINLQNAC EKELKQTSSN GLSVRQDKRS QGDVNRKDYV
201: SSREYSEKSA SNLSTKEKID ESMKQVNKPS SEDFRDQSSA NFSSLHDTDG CLLQGNRAGA QLGEPDHVDC VSVETARDAW NASRVRSSSY SGDGLGSPSE
301: PDNDGACRGD KTCGTLQKGN VDTNDDLSET SMVDSMSGLD ITPDDVVGII GQKHFWKARR AIVNQQRVFA VQVFELHRLI KVQRLIAGSP HLMVDESAYL
401: GKPSLKSSPA KKLPLEYVVK PPPNMVMHKD DYERASHQLE CSAENAVGKT HLPSVKNGNP PSNYGPYIGN PPPAPAPTDS KMGPWCYPQP PGHQWLVPVM
501: SPSEGLVYKP YPGPGFMSTV CGGCGPMGSA PMTGSFINPA YGVPSSHHHQ GIGVHPGTPP IGHGYFPPYG MSVMNHPTIS GSAVEQMNRF AGHGSLSQSG
601: QLSGGGASFN MQHQNSCNVP TPKRAIPQGV KFPMSKDSEF QGSTASSPSE REQQVGTGDT AEGRDPLPLF PMAPAAIPAG DPQPNGTDQP TRVIRVVPHN
701: PRSATESAAR IFQSIQDERK QLDST

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.