Factsheet for PGSC0003DMT400035914

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065870.2.1	Tomato	nucleus	87.8	89.44
PGSC0003DMT400065601	Potato	nucleus	49.39	50.86
VIT_04s0008g00660.t01	Wine grape	nucleus	48.93	44.28
PGSC0003DMT400075345	Potato	nucleus	47.56	43.39
KRH61488	Soybean	nucleus	44.97	41.32
GSMUA_Achr6P33500_001	Banana	mitochondrion	22.41	39.52
KRH05522	Soybean	nucleus	40.85	37.59
GSMUA_Achr2P08490_001	Banana	nucleus	23.32	37.5
GSMUA_Achr1P14390_001	Banana	nucleus	30.34	37.41
Bra007774.1-P	Field mustard	nucleus	33.69	37.33
Os01t0566050-00	Rice	cytosol, nucleus	15.4	37.27
CDY66493	Canola	nucleus	31.4	37.25
GSMUA_Achr1P05150_001	Banana	nucleus	22.56	36.72
CDY11505	Canola	nucleus	32.93	36.49
CDX76735	Canola	nucleus	32.01	35.84
CDY35321	Canola	nucleus	31.86	34.89
Bra034284.1-P	Field mustard	nucleus	31.4	34.22
AT2G25930.1	Thale cress	nucleus	34.91	32.95
OQU78543	Sorghum	nucleus	34.91	30.74
KRH15494	Soybean	nucleus	19.21	30.14
Zm00001d039156_P001	Maize	nucleus	29.27	29.68
Os06t0142600-01	Rice	nucleus	34.15	29.47
Zm00001d044232_P001	Maize	nucleus	32.93	28.38
TraesCS1A01G443200.2	Wheat	nucleus	32.93	27.94
TraesCS1B01G477400.1	Wheat	nucleus	32.62	27.83
TraesCS1D01G451200.2	Wheat	nucleus	32.32	27.64
EES03137	Sorghum	nucleus	32.93	27.62
HORVU1Hr1G094980.4	Barley	nucleus	32.16	27.58
PGSC0003DMT400012338	Potato	nucleus	25.15	25.27
Os01t0566100-01	Rice	nucleus	13.57	22.47
GSMUA_Achr5P09620_001	Banana	unclear	26.22	21.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400035914	EnsemblPlantsGene:PGSC0003DMG400013826	EntrezGene:102601288	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PGSC:PGSC0003DMG400013826	RefSeq:XP_015167788.1
UniParc:UPI0002969E52	UniProt:M1B307	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:

Description

Early flowering 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400013826]

Coordinates

chr8:+:37230227..37235555

Molecular Weight (calculated)

72243.9 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.723

Length

656 amino acids

Sequence
(BLAST)

001: MKRGKVEEKV MGPMFPRLHV NDTDKGGPRA PPRNKMALYE QLSIPSQRFN SGVLPLDPNN TSKMGPPSSS QGSGHDRGGY FPIQHPPSRH LADKPPGHSS
101: DPNTLLQQYE LKKRTEEDDF TVPIFVNSKL GHANKSHNLD MEKLSPSGPV FCPNKELEGV TDLTLRQQRN SQNKENPKCT VARREKTTSN SASKECRLDP
201: QVGCTIIPEP VKVTYDDSSY PRKAFISEEQ LTANDLVNDT ESQEDKAHKS LQTGNLDRGD DLSETSRVES ISGTDISPDV IVGIIGLKRF WKARRAIVNQ
301: QRVFAVQVFE LHRLIKVQRL IAGSPNSSLE DPTYLGKPLK SSSVKRLPLD CIVRESQSVL KRKHDSEKPN FRMEYSAEST VGKASLSTVQ NGSQLSNHKP
401: FSGNPLPTPV TNDSNAGPWC FQQPPGHQWL IPVMSPSEGL VYKPFPGPEF TGPICGGGPA GSTPTMGNFF APTYGVPAPN PHYQGMGVPF APPTGHGYFR
501: QYGMPVMNPP ISSPATEESN QFTLPGLQQQ LSGVVDNFNI QHQDSSNVLN EKNDNFPDVV RFQTTKDNEL QASTASSPIE RTHETSTGGR NMLSLFPTSP
601: VTDNRDGSPQ ACVPDNPARV IKVVPHNARS ATESVARIFQ SIQQERKQYD LGFTHL

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.