CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05522	Soybean	nucleus	57.7	57.78
VIT_04s0008g00660.t01	Wine grape	nucleus	48.88	48.14
PGSC0003DMT400035914	Potato	nucleus	41.32	44.97
Solyc08g065870.2.1	Tomato	nucleus	40.06	44.41
KRH15494	Soybean	nucleus	25.63	43.78
Solyc11g070100.1.1	Tomato	nucleus	35.01	41.46
PGSC0003DMT400065601	Potato	nucleus	36.97	41.44
GSMUA_Achr6P33500_001	Banana	mitochondrion	21.15	40.59
PGSC0003DMT400075345	Potato	nucleus	39.36	39.08
Solyc12g095900.1.1	Tomato	nucleus	39.36	38.92
GSMUA_Achr1P05150_001	Banana	nucleus	21.15	37.47
GSMUA_Achr2P08490_001	Banana	nucleus	21.15	37.01
CDX76735	Canola	nucleus	30.25	36.86
CDY66493	Canola	nucleus	28.29	36.53
Bra007774.1-P	Field mustard	nucleus	30.25	36.49
CDY11505	Canola	nucleus	29.83	35.98
GSMUA_Achr1P14390_001	Banana	nucleus	26.75	35.9
Os01t0566050-00	Rice	cytosol, nucleus	13.17	34.69
CDY35321	Canola	nucleus	28.43	33.89
Bra034284.1-P	Field mustard	nucleus	28.57	33.89
AT2G25930.1	Thale cress	nucleus	32.91	33.81
OQU78543	Sorghum	nucleus	32.49	31.14
Zm00001d039156_P001	Maize	nucleus	27.87	30.76
Os06t0142600-01	Rice	nucleus	30.81	28.95
TraesCS1B01G477400.1	Wheat	nucleus	30.81	28.61
TraesCS1A01G443200.2	Wheat	nucleus	30.81	28.46
HORVU1Hr1G094980.4	Barley	nucleus	30.39	28.37
TraesCS1D01G451200.2	Wheat	nucleus	30.39	28.29
KRH47177	Soybean	nucleus	26.89	28.28
Zm00001d044232_P001	Maize	nucleus	29.97	28.12
EES03137	Sorghum	nucleus	29.69	27.11
KRH44225	Soybean	nucleus	26.61	26.87
Os01t0566100-01	Rice	nucleus	12.61	22.73
GSMUA_Achr5P09620_001	Banana	unclear	25.07	21.94

Protein Annotations

EMBL:ACUP02002170	EMBL:KX943537	EnsemblPlants:KRH61488	EnsemblPlantsGene:GLYMA_04G050200	EntrezGene:100793561	GO:GO:0000003
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281
ProteinID:ACJ61495.1	ProteinID:KRH61487.1	ProteinID:KRH61488	ProteinID:KRH61488.1	ProteinID:KRH61489.1	SEG:seg
UniParc:UPI0002339689	UniProt:K7KI62	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:

Description

hypothetical protein

Coordinates

chr4:-:4075901..4081260

Molecular Weight (calculated)

77626.4 Da

IEP (calculated)

8.731

GRAVY (calculated)

-0.679

Length

714 amino acids

Sequence
(BLAST)

001: MKRGKDDEKV MGPMFPRLHV NDTEKGGPRA PPRNKMALYE QFSIPSQRFN SGVLPLNPNI SSNTVPPASS SLRTVPERNC VYPVHLPPQR PIHRAEKCNS
101: RQSEGTNLSA SLEQRKKVDE DDFRVPVYFH SRTGQCNDKS VESFNGKKLT PTGSRYFGGS ISGQSDCERD PKQFGSSVVN MRKDVRSEID VLPQVSTSKE
201: QASMSVRSIS TRENIHTLLR QAKVTPNREF QDCHVSKFNR LQQGETCLQL ECGVESRSND IGDNGCLVES ARETDKGNAP TANQTSPADA INDTEHHDTR
301: MGSPIQRGNL NESDNASKIS MVENLSTVRI SPDDVVGIIG QKHFWKARRA IANQQRVFAV QVFELHRLIK VQQLIAGSPD ILLEDGAFLG KSPPKGSTPK
401: KLALEYVVKP RQQNLKRKDD SEKLNHKMEC SAENAVGKTS LSSVKDGSHL SKCTPFPGNQ HQTNVAADSG MGPWCFNQSP PGHPWLIPVM TPSEGLVYKP
501: YPGPGFTGTG CGGGCGPFVP ALLGGSFMNP GYGIPTSHQG VGVPPDTHPG SHGYLPPYGM PVMNSSMSES VVEQGNQFSA LGSHGHNGHL PGGGKANHNT
601: NNKSSCNLPV QRNGAISHVL KHQTSKDFEL QETSASSPSE MAQGLSTGQV AEGRDVLPLF PMVPAEPESV PQSLETGQHT RVIKVVPHNR RSATASAARI
701: FQSIQEGRKQ NDSV

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.