CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044232_P001	Maize	nucleus	82.23	84.49
Os01t0566050-00	Rice	cytosol, nucleus	22.76	65.68
Os06t0142600-01	Rice	nucleus	52.17	53.68
OQU78543	Sorghum	nucleus	46.04	48.32
Os01t0566100-01	Rice	nucleus	23.27	45.96
GSMUA_Achr2P08490_001	Banana	nucleus	20.08	38.48
GSMUA_Achr6P33500_001	Banana	mitochondrion	18.03	37.9
GSMUA_Achr1P05150_001	Banana	nucleus	18.8	36.48
GSMUA_Achr1P14390_001	Banana	nucleus	24.81	36.47
PGSC0003DMT400035914	Potato	nucleus	27.62	32.93
Solyc08g065870.2.1	Tomato	nucleus	26.34	31.99
VIT_04s0008g00660.t01	Wine grape	nucleus	29.41	31.72
CDY66493	Canola	nucleus	22.38	31.65
CDY11505	Canola	nucleus	23.02	30.41
Bra007774.1-P	Field mustard	nucleus	23.02	30.41
CDY35321	Canola	nucleus	22.89	29.88
CDX76735	Canola	nucleus	22.25	29.69
KRH61488	Soybean	nucleus	27.11	29.69
Solyc11g070100.1.1	Tomato	nucleus	22.89	29.68
Bra034284.1-P	Field mustard	nucleus	22.76	29.57
PGSC0003DMT400065601	Potato	nucleus	23.79	29.2
KRH05522	Soybean	nucleus	25.45	27.91
VIT_09s0002g02680.t01	Wine grape	nucleus	26.21	27.7
KRH47177	Soybean	nucleus	23.91	27.54
PGSC0003DMT400075345	Potato	nucleus	24.94	27.12
CDY32422	Canola	nucleus, plastid	17.01	27.09
CDY48882	Canola	nucleus	16.88	26.94
AT2G25930.1	Thale cress	nucleus	23.79	26.76
Solyc12g095900.1.1	Tomato	nucleus	24.68	26.73
KRH44225	Soybean	nucleus	23.91	26.45
Bra001825.1-P	Field mustard	nucleus	17.26	25.86
CDY62750	Canola	nucleus	16.11	25.77
Bra023887.1-P	Field mustard	nucleus	17.01	25.68
KRH15494	Soybean	nucleus	13.68	25.6
CDY56915	Canola	nucleus	17.52	25.46
CDY51450	Canola	nucleus	17.01	24.81
Bra031274.1-P	Field mustard	nucleus	17.01	24.81
AT3G21320.1	Thale cress	nucleus	17.01	24.63
Solyc06g062480.2.1	Tomato	plasma membrane	18.93	24.58
PGSC0003DMT400012338	Potato	nucleus	20.2	24.2
GSMUA_Achr5P09620_001	Banana	unclear	24.42	23.41

Protein Annotations

EnsemblPlants:EES03137	EnsemblPlantsGene:SORBI_3003G191700	EntrezGene:8078190	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PANTHER:PTHR34281:SF5	ProteinID:EES03137
ProteinID:EES03137.1	RefSeq:XP_002458017.1	SEG:seg	UniParc:UPI0001A84D61	UniProt:C5XNP1	MapMan:15.5.27
MapMan:27.1.6.3.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:51270036..51276423

Molecular Weight (calculated)

84910.5 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.819

Length

782 amino acids

Sequence
(BLAST)

001: MTRGGGGGGD GKGPLFPRLH VSDAGKGGGP RAPPRNKMAL YEQLTVPSNR FSSPAPAPAR AAGAKASLVP STSAAQVYGY DRTLFQPFNV PSNEPARSSE
101: KFKGNCINGQ SNSTRRESLR MSSQTKSKDV CASKSIAGCT SQHRGGNTIK SSGKKVVNDD EFMVPSICSP RIYRYSTQEH ADKSKPQSTT NPHKSPSMSK
201: SSAKCYSTVN KHLDRMNEAD MRLMNSPKVK EKEAVQVPKG VEVKEKDSSI QASEKFKDKY AKLCQMRNKV SNINRSDNNS CQPTSVNGKS TEAKNPTATR
301: NPSSCKPCTD VDSSNWNSNL LERSPREGGA KRKRQHHSGE QNDDLSDDSV ECIPGWELSP DEIAGAIGPK HFWKARRAIQ NQQRVFAVQV FELHKLIKVQ
401: KLIAASPHLL IEGDPVLGNA LMGKRNKLPK GNLKVQTLSI TNKDDIQPTL EQPELSKQNT EGNPSHHSRD DGLDDNHHDQ AAANETFTSN PPAIPVAPDN
501: KQNNWCMNPP QNQWLVPVMS PSEGLVYKPY AGPCPPVGNL LTPFYANCTP LRLPSTPYGV PMPHQPQQMV PPGAPAMHMN YFPPFSMPVM NPGTPASAVE
601: QGSHAAAPQP QGHMEQQSLI SCNMSHPSGI WRFLASRDSE PQASSASSPF DRLEAQGDGS GPVSFFPKAS VLNAQPQPSS GGRDQQNHVI RVVPRNAQTA
701: SVPNAQPQPS SGGRDQQNHV IRVVPRNAQT ASVANAQTQP SSGGQDQWNH VIRVVPHNAQ TASESAARIF RSIQMERKQN DS

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.