Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023887.1-P | Field mustard | nucleus | 97.14 | 91.7 |
| CDY51450 | Canola | nucleus | 73.62 | 67.16 |
| CDY48882 | Canola | nucleus | 66.67 | 66.53 |
| CDY56915 | Canola | nucleus | 71.98 | 65.43 |
| CDY32422 | Canola | nucleus, plastid | 64.42 | 64.15 |
| AT3G21320.1 | Thale cress | nucleus | 70.14 | 63.52 |
| GSMUA_Achr6P33500_001 | Banana | mitochondrion | 23.52 | 30.91 |
| GSMUA_Achr1P05150_001 | Banana | nucleus | 23.93 | 29.03 |
| Os01t0566050-00 | Rice | cytosol, nucleus | 15.34 | 27.68 |
| GSMUA_Achr2P08490_001 | Banana | nucleus | 18.61 | 22.3 |
| GSMUA_Achr1P14390_001 | Banana | nucleus | 23.93 | 21.99 |
| Solyc06g062480.2.1 | Tomato | plasma membrane | 26.18 | 21.26 |
| CDY66493 | Canola | nucleus | 22.49 | 19.89 |
| PGSC0003DMT400012338 | Potato | nucleus | 25.97 | 19.45 |
| KRH47177 | Soybean | nucleus | 26.79 | 19.29 |
| KRH44225 | Soybean | nucleus | 27.2 | 18.81 |
| VIT_09s0002g02680.t01 | Wine grape | nucleus | 28.22 | 18.65 |
| Zm00001d039156_P001 | Maize | nucleus | 24.54 | 18.55 |
| CDX76735 | Canola | nucleus | 22.09 | 18.43 |
| CDY11505 | Canola | nucleus | 22.29 | 18.41 |
| CDY35321 | Canola | nucleus | 22.49 | 18.36 |
| OQU78543 | Sorghum | nucleus | 25.77 | 16.91 |
| Os06t0142600-01 | Rice | nucleus | 25.15 | 16.18 |
| EES03137 | Sorghum | nucleus | 25.77 | 16.11 |
| Zm00001d044232_P001 | Maize | nucleus | 24.74 | 15.9 |
| TraesCS1B01G477400.1 | Wheat | nucleus | 24.95 | 15.86 |
| HORVU1Hr1G094980.4 | Barley | nucleus | 24.74 | 15.82 |
| TraesCS1A01G443200.2 | Wheat | nucleus | 24.74 | 15.65 |
| TraesCS1D01G451200.2 | Wheat | nucleus | 24.54 | 15.65 |
| GSMUA_Achr5P09620_001 | Banana | unclear | 23.52 | 14.09 |
| Os01t0566100-01 | Rice | nucleus | 9.2 | 11.36 |
Protein Annotations
| EnsemblPlants:CDY62750 | EnsemblPlantsGene:GSBRNA2T00037564001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | PANTHER:PTHR34281 | PANTHER:PTHR34281:SF2 | ProteinID:CDY62750 | ProteinID:CDY62750.1 |
| SEG:seg | UniParc:UPI0004EDB2A6 | UniProt:A0A078J7P5 | MapMan:15.5.27 | MapMan:27.1.6.3.2 | : |
Description
BnaC01g43670DBnaC01g43670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7P5]
Coordinates
chrLK034186:-:30706..32782
Molecular Weight (calculated)
54681.9 Da
IEP (calculated)
9.027
GRAVY (calculated)
-0.655
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGMKDEAKR ITIPPLFPRV HVKDTERGGL SQPFDGKTMS PYKHSILPSP TDKISYSPST LSLSLPPPAN NACLQTDRSE MNQLSPNYNT SPASNLEGKV
101: HKKGMIYPSP RGSSVKPSSI KQNEYNLTNL DSLKVPVFRL PETDPKANTD LSLQFHNSST SKSRGEAAGF KPLLNNLDIR ELLLPLQCLE DESNNGSLSV
201: MKTQLYRRRT PKTVPPREQE ASDCSAIDSL SGMSAASNDV ARVIGEKRFW KMRAYMISQQ KIFATQVFEL HRLIMNQKPV TEAYPEHMKP KIPLPFISKE
301: LMIPIWQQQL LPPQENQWLV PVMSPSEGLV YKPYAGPCPP PPSAFMVPIY GQDSPSRFPA STQFSHNCFP PRTTVLDQTN PFGQLQRWSS TSSHMTQAIP
401: FSLKKSQESN DSEVHGSTAS SPPEKHKFDV LPLFPTEPTH HTDEYEQKQQ PFSGAIKAIP HNSTSASESA ARIFRSIQEE RRDSDHMIS
101: HKKGMIYPSP RGSSVKPSSI KQNEYNLTNL DSLKVPVFRL PETDPKANTD LSLQFHNSST SKSRGEAAGF KPLLNNLDIR ELLLPLQCLE DESNNGSLSV
201: MKTQLYRRRT PKTVPPREQE ASDCSAIDSL SGMSAASNDV ARVIGEKRFW KMRAYMISQQ KIFATQVFEL HRLIMNQKPV TEAYPEHMKP KIPLPFISKE
301: LMIPIWQQQL LPPQENQWLV PVMSPSEGLV YKPYAGPCPP PPSAFMVPIY GQDSPSRFPA STQFSHNCFP PRTTVLDQTN PFGQLQRWSS TSSHMTQAIP
401: FSLKKSQESN DSEVHGSTAS SPPEKHKFDV LPLFPTEPTH HTDEYEQKQQ PFSGAIKAIP HNSTSASESA ARIFRSIQEE RRDSDHMIS
001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
Arabidopsis Description
EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.