CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48882	Canola	nucleus	84.52	84.69
CDY62750	Canola	nucleus	64.15	64.42
AT3G21320.1	Thale cress	nucleus	67.62	61.48
CDY51450	Canola	nucleus	66.8	61.19
CDY56915	Canola	nucleus	66.6	60.78
GSMUA_Achr6P33500_001	Banana	mitochondrion	25.25	33.33
GSMUA_Achr1P05150_001	Banana	nucleus	25.46	31.02
Os01t0566050-00	Rice	cytosol, nucleus	15.68	28.41
GSMUA_Achr2P08490_001	Banana	nucleus	19.14	23.04
GSMUA_Achr1P14390_001	Banana	nucleus	23.22	21.43
Solyc06g062480.2.1	Tomato	plasma membrane	26.07	21.26
CDX76735	Canola	nucleus	24.03	20.14
CDY66493	Canola	nucleus	22.61	20.07
CDY11505	Canola	nucleus	24.03	19.93
Zm00001d039156_P001	Maize	nucleus	26.07	19.78
KRH47177	Soybean	nucleus	27.29	19.73
PGSC0003DMT400012338	Potato	nucleus	26.07	19.6
KRH44225	Soybean	nucleus	27.9	19.38
VIT_09s0002g02680.t01	Wine grape	nucleus	29.12	19.32
Os06t0142600-01	Rice	nucleus	27.9	18.03
CDY35321	Canola	nucleus	21.59	17.7
HORVU1Hr1G094980.4	Barley	nucleus	27.09	17.39
OQU78543	Sorghum	nucleus	26.27	17.32
TraesCS1B01G477400.1	Wheat	nucleus	26.88	17.17
TraesCS1D01G451200.2	Wheat	nucleus	26.68	17.08
EES03137	Sorghum	nucleus	27.09	17.01
TraesCS1A01G443200.2	Wheat	nucleus	26.68	16.95
Zm00001d044232_P001	Maize	nucleus	26.07	16.82
GSMUA_Achr5P09620_001	Banana	unclear	23.22	13.97
Os01t0566100-01	Rice	nucleus	7.74	9.6

Protein Annotations

EnsemblPlants:CDY32422	EnsemblPlantsGene:GSBRNA2T00052025001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	ProteinID:CDY32422	ProteinID:CDY32422.1	SEG:seg
UniParc:UPI0004EF1DE2	UniProt:A0A078H4K4	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:

Description

BnaC03g42060DBnaC03g42060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4K4]

Coordinates

chrLK032294:-:294069..296331

Molecular Weight (calculated)

54776.3 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.676

Length

491 amino acids

Sequence
(BLAST)

001: MGGMRDEAKR ITIPPLFPRV HLNDTGRNGK SMSLLHKRSS LPSLTNKISD SSSTLSLSLP PPADNACLTT DQPEKNHFPP ICNTSPTTNL EEKLNKTAMN
101: YPSPRESSVT NTKPSSIKQN EYHFKSLANL DSLKAALNNL HIPELLLPQC FEEESQNESL NVMKTQKKPK TVPTCEQDVS DCSAIDSLSG ISASSNDVAR
201: VIGEKRFWKM RTYMINQQKI FETQVFELHR LIMVQKMVAK SPNLVLESKL NGGKRGLSHF HLLEMAASKV IKPITKKHKH VTEEYPEHMK PKVPLPSINK
301: DLMTPMWPQQ PLPPPGNQWL VPVMSPSEGL VYKPYTGPSP PPPSASMVPF YGQDSLNPTL GFPVSTQLNH SYFPPTNART SLDQTNPFGQ LQRWSNTSSH
401: VTQASPFSLK KSQESNDSDV HGSTASSPPE KHKLDVLPLF PTKPTHHTNE YEEKEKPLRR AIKAIPHNST SASESAARIF RSIQEGLRSY D

Best Arabidopsis Sequence Match ( AT3G21320.1 )
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS

Arabidopsis Description

EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.