CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11505	Canola	nucleus	89.76	88.85
CDY66493	Canola	nucleus	56.31	59.67
CDY35321	Canola	nucleus	54.78	53.59
AT2G25930.1	Thale cress	nucleus	54.27	45.76
VIT_04s0008g00660.t01	Wine grape	nucleus	40.1	32.41
GSMUA_Achr2P08490_001	Banana	nucleus	22.53	32.35
Solyc08g065870.2.1	Tomato	nucleus	35.32	32.14
PGSC0003DMT400035914	Potato	nucleus	35.84	32.01
Solyc11g070100.1.1	Tomato	nucleus	31.74	30.85
GSMUA_Achr6P33500_001	Banana	mitochondrion	19.28	30.38
GSMUA_Achr1P05150_001	Banana	nucleus	20.82	30.27
GSMUA_Achr1P14390_001	Banana	nucleus	27.47	30.26
KRH61488	Soybean	nucleus	36.86	30.25
KRH15494	Soybean	nucleus	21.16	29.67
PGSC0003DMT400065601	Potato	nucleus	32.08	29.51
KRH05522	Soybean	nucleus	35.84	29.45
PGSC0003DMT400075345	Potato	nucleus	34.3	27.96
Os01t0566050-00	Rice	cytosol, nucleus	12.8	27.68
Solyc12g095900.1.1	Tomato	nucleus	32.59	26.45
Zm00001d039156_P001	Maize	nucleus	29.01	26.28
CDY32422	Canola	nucleus, plastid	20.14	24.03
OQU78543	Sorghum	nucleus	30.55	24.03
HORVU1Hr1G094980.4	Barley	nucleus	30.72	23.53
CDY48882	Canola	nucleus	19.62	23.47
TraesCS1B01G477400.1	Wheat	nucleus	30.55	23.28
TraesCS1D01G451200.2	Wheat	nucleus	30.2	23.08
TraesCS1A01G443200.2	Wheat	nucleus	30.2	22.9
Os06t0142600-01	Rice	nucleus	29.52	22.76
Zm00001d044232_P001	Maize	nucleus	29.35	22.6
EES03137	Sorghum	nucleus	29.69	22.25
CDY62750	Canola	nucleus	18.43	22.09
CDY51450	Canola	nucleus	19.8	21.64
CDY56915	Canola	nucleus	19.8	21.56
Os01t0566100-01	Rice	nucleus	12.63	18.69
GSMUA_Achr5P09620_001	Banana	unclear	25.94	18.63

Protein Annotations

EnsemblPlants:CDX76735	EnsemblPlantsGene:GSBRNA2T00127223001	ncoils:Coil	PANTHER:PTHR34281	ProteinID:CDX76735	ProteinID:CDX76735.1
SEG:seg	UniParc:UPI0004EDC4DB	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:

Description

BnaC08g33210D

Coordinates

chrLK031808:+:755111..758263

Molecular Weight (calculated)

64338.2 Da

IEP (calculated)

7.245

GRAVY (calculated)

-0.821

Length

586 amino acids

Sequence
(BLAST)

001: MKSGKEEEKR LEPMFPRLHV KDAEKGGPRA PPRNKMALYE QLSIPSQRFT SSDRAGSLPR NTSSPLLPPG PSSNQGTDNF VSHMPFMENV RASSAHHDHQ
101: RKIAREEDDF AVPVFINSRC SGRGKCGSKR GVGLAANSAT EDMDLASTSD RVDDGRINNG VESHMAASEE EGHGNANDEY CTSGGGYTSL QQEINNEEEA
201: SDDNSMVDSV SSLDVSPDDV VGVLGQKRFW RARKAIANQQ RVFAVQLFEL HRLIKVQRLI AASPDVLVDD MSYVGKVTAK SYPVKELHLP SGFIVKPPLP
301: QVIKHRSSSD SDKTDQHKME CSAENVVGRL PNQGQGHHHQ QPSNYMMPFA TNQPSPNGCY YPPQPPPSGG NQQWLIPVMS PSEGLIYKPH PGPDPGHTGP
401: VCGGYYGHFM PAPMFMGGGG GQPPPFHPGM GFLSHGNGYF PPYGGIMMNP YYSGQQQQQQ PNEQMNNNIQ QQSSVNEATS QQQQPTKSYP RAKKSRQEGI
501: SGKKKSFQPF SAVDDVHDDK INNAAQPTEE MMTTTTTTTT TVTQTTRDGA GVTRVIKVVP HNANLASENA ARIFRSIQEE RKHYYP

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.