Factsheet for PGSC0003DMT400065601

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g070100.1.1	Tomato	nucleus	73.31	77.45
PGSC0003DMT400035914	Potato	nucleus	50.86	49.39
PGSC0003DMT400075345	Potato	nucleus	47.41	42.0
VIT_04s0008g00660.t01	Wine grape	nucleus	46.47	40.83
GSMUA_Achr6P33500_001	Banana	mitochondrion	21.82	37.37
KRH61488	Soybean	nucleus	41.44	36.97
GSMUA_Achr2P08490_001	Banana	nucleus	22.61	35.29
GSMUA_Achr1P05150_001	Banana	nucleus	22.29	35.24
KRH05522	Soybean	nucleus	39.4	35.2
GSMUA_Achr1P14390_001	Banana	nucleus	28.57	34.21
CDY66493	Canola	nucleus	28.41	32.73
Bra007774.1-P	Field mustard	nucleus	30.14	32.43
Os01t0566050-00	Rice	cytosol, nucleus	13.66	32.1
CDY11505	Canola	nucleus	29.83	32.09
CDX76735	Canola	nucleus	29.51	32.08
CDY35321	Canola	nucleus	29.04	30.88
KRH15494	Soybean	nucleus	20.25	30.86
Bra034284.1-P	Field mustard	nucleus	28.89	30.56
AT2G25930.1	Thale cress	nucleus	33.12	30.36
Zm00001d039156_P001	Maize	nucleus	29.04	28.59
OQU78543	Sorghum	nucleus	33.12	28.32
TraesCS1A01G443200.2	Wheat	nucleus	32.03	26.39
Os06t0142600-01	Rice	nucleus	31.4	26.32
HORVU1Hr1G094980.4	Barley	nucleus	31.55	26.27
TraesCS1B01G477400.1	Wheat	nucleus	31.55	26.14
TraesCS1D01G451200.2	Wheat	nucleus	31.4	26.08
Zm00001d044232_P001	Maize	nucleus	29.98	25.1
EES03137	Sorghum	nucleus	29.2	23.79
PGSC0003DMT400012338	Potato	nucleus	21.82	21.29
Os01t0566100-01	Rice	nucleus	12.24	19.7
GSMUA_Achr5P09620_001	Banana	unclear	24.96	19.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400065601	EnsemblPlantsGene:PGSC0003DMG400025519	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PGSC:PGSC0003DMG400025519	UniParc:UPI000295E20B	UniProt:M1CEB3
MapMan:15.5.27	MapMan:27.1.6.3.2	:	:	:	:

Description

Early flowering 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400025519]

Coordinates

chr11:+:42412353..42417050

Molecular Weight (calculated)

70770.4 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.757

Length

637 amino acids

Sequence
(BLAST)

001: MKRGIGQEKV MGPMFPRLHV NDTEKGGPRA PPRNKMALYE QLSIPSQRYN PGDLPHNSSN SANLFPPHSS QENEHERGVF FSRQLPALRH PVEKPYGCSS
101: GSNTPLREVK SKRQTQKEDF RVPTFGNSKE HAVSREDYFK GTSDSLSIDK RDGTLKRTDQ LSHFKPRENL VNTFGESHKT NIVQLEFRSD SQVDCTVFSG
201: SVIDVDDGNL LSIWMTNNLI IIRREDKTNN LINDTDSQED KTCKSSQTGE MAHSDELSET SMVEYVSEMD ISPDDVVRMI GQKHFWKARR AIANQQRMLA
301: VQVFELHRLL KVQKLIAGSP NVNLEDNAYL GKPLKRLSAK RISLEHSVKA PENVSRHKND SEKPNPRMEC NAENDVGKTS LSSVQNGCQP SSCNPLSEKQ
401: LPTPVKHDSL MSPWYFNQAP GHQWLIPMMS PSEGLMFKPH SGPAVMSPVY GGCGPPGSTP MMGNFLAPAY GLPFAPPTGH GYFRPFGMPV MNPAIPSPAQ
501: YQSNQVAASH SKGQLSGGRA SFNIQHQNSS NAGSENDGTM PEGVRLYPSR DSELQASTAS SPSERIRAVD MGNSTRGRSA FHHFPTSPAV DNPVLRPQPH
601: FPLRPARAIK VTPHNARSAT ESVARIFQSI QDERKQY

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.