Factsheet for GSMUA_Achr1P14390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08490_001	Banana	nucleus	38.35	50.0
GSMUA_Achr6P33500_001	Banana	mitochondrion	26.69	38.17
GSMUA_Achr1P05150_001	Banana	nucleus	28.01	36.97
Solyc11g070100.1.1	Tomato	nucleus	35.15	31.01
Solyc08g065870.2.1	Tomato	nucleus	37.41	30.9
PGSC0003DMT400035914	Potato	nucleus	37.41	30.34
VIT_04s0008g00660.t01	Wine grape	nucleus	40.23	29.52
Zm00001d039156_P001	Maize	nucleus	35.34	29.06
CDY66493	Canola	nucleus	29.7	28.57
PGSC0003DMT400065601	Potato	nucleus	34.21	28.57
Bra034284.1-P	Field mustard	nucleus	31.39	27.74
HORVU1Hr1G094980.4	Barley	nucleus	39.66	27.58
CDX76735	Canola	nucleus	30.26	27.47
TraesCS1D01G451200.2	Wheat	nucleus	39.29	27.25
OQU78543	Sorghum	nucleus	38.16	27.25
CDY35321	Canola	nucleus	30.64	27.21
KRH05522	Soybean	nucleus	36.28	27.07
TraesCS1A01G443200.2	Wheat	nucleus	39.29	27.04
KRH15494	Soybean	nucleus	21.24	27.03
TraesCS1B01G477400.1	Wheat	nucleus	38.91	26.92
KRH61488	Soybean	nucleus	35.9	26.75
Os01t0566050-00	Rice	cytosol, nucleus	13.53	26.57
Bra007774.1-P	Field mustard	nucleus	29.51	26.52
CDY11505	Canola	nucleus	29.51	26.52
VIT_09s0002g02680.t01	Wine grape	nucleus	36.09	25.95
PGSC0003DMT400075345	Potato	nucleus	34.4	25.45
Zm00001d044232_P001	Maize	nucleus	36.09	25.23
Solyc12g095900.1.1	Tomato	nucleus	33.83	24.93
Os06t0142600-01	Rice	nucleus	35.53	24.87
EES03137	Sorghum	nucleus	36.47	24.81
AT2G25930.1	Thale cress	nucleus	31.95	24.46
Bra023887.1-P	Field mustard	nucleus	23.5	24.13
CDY62750	Canola	nucleus	21.99	23.93
CDY32422	Canola	nucleus, plastid	21.43	23.22
GSMUA_Achr5P09620_001	Banana	unclear	35.53	23.16
CDY48882	Canola	nucleus	21.24	23.06
Bra031274.1-P	Field mustard	nucleus	23.12	22.95
CDY51450	Canola	nucleus	23.12	22.95
CDY56915	Canola	nucleus	23.12	22.86
Os01t0566100-01	Rice	nucleus	16.92	22.73
KRH47177	Soybean	nucleus	28.95	22.68
Bra001825.1-P	Field mustard	nucleus	21.62	22.03
AT3G21320.1	Thale cress	nucleus	21.99	21.67
Solyc06g062480.2.1	Tomato	plasma membrane	24.25	21.43
KRH44225	Soybean	nucleus	28.38	21.36
PGSC0003DMT400012338	Potato	nucleus	23.5	19.14

Protein Annotations

EnsemblPlants:GSMUA_Achr1P14390_001	EnsemblPlants:GSMUA_Achr1T14390_001	EnsemblPlantsGene:GSMUA_Achr1G14390_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	ncoils:Coil	PANTHER:PTHR34281	SEG:seg
UniParc:UPI000296D72B	UniProt:M0RZU7	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:

Description

Putative Protein EARLY FLOWERING 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14390_001]

Coordinates

chr1:-:10946319..10951750

Molecular Weight (calculated)

58154.6 Da

IEP (calculated)

7.913

GRAVY (calculated)

-0.689

Length

532 amino acids

Sequence
(BLAST)

001: MKGGKEEGKI MGPLFPRLHV NDADKGGPRA PPRNKMALYE QHSVPSQRLN RSSSALPLPH QNACLLVPSN PLSQGCGQER NVLSPFFMPR NTPAYSSEKV
101: DCQLSDGIDP NSRLEERSLK HKKMDDVDDF RVPTFDKSEP ALCSNKDTSR QPEESLVIAE HREKSPPSAR VEERPIVAKV SNGARDVTEK SRCGGVSSCQ
201: ESYQNGDLIG PRTMNKVDVV ENGDGSQKRQ RTTNMVDNGN LENNVKENGS LGEHIAERKD EASEASIDDS ISGLEISPDD VVGVIGPKHF WKARRAFMNQ
301: QRVFAIQVFE LHRLIKVQKS IAASPHLLLE GNPYLSKSPV KAPSKVPLLD CNMNSQQDAV KQKDAERQKS DQKKDLQTEN IARAPPPTFP PSHSTPPDNN
401: PSPWCLHPPA NQWLVPVMSP SEGLIYKPYT GSCAPSSGFL APVYGGCMPL GVPSLAGNFM NTAYGVPASH RPPDTGVLAG ASAKENLVCP SRSSGRDSQA
501: QAIKVVPHNA RSAIESVARI FQSIQEERLQ HD

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.