Factsheet for GSMUA_Achr1P05150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33500_001	Banana	mitochondrion	82.38	89.25
Os01t0566050-00	Rice	cytosol, nucleus	23.33	34.69
GSMUA_Achr2P08490_001	Banana	nucleus	29.28	28.92
GSMUA_Achr1P14390_001	Banana	nucleus	36.97	28.01
CDY32422	Canola	nucleus, plastid	31.02	25.46
CDY48882	Canola	nucleus	30.27	24.9
Solyc11g070100.1.1	Tomato	nucleus	36.23	24.21
Bra023887.1-P	Field mustard	nucleus	31.02	24.13
VIT_04s0008g00660.t01	Wine grape	nucleus	43.18	24.0
CDY62750	Canola	nucleus	29.03	23.93
CDY56915	Canola	nucleus	31.76	23.79
Bra001825.1-P	Field mustard	nucleus	30.52	23.56
Bra031274.1-P	Field mustard	nucleus	31.27	23.51
CDY51450	Canola	nucleus	31.27	23.51
Solyc08g065870.2.1	Tomato	nucleus	36.72	22.98
AT3G21320.1	Thale cress	nucleus	30.27	22.59
PGSC0003DMT400035914	Potato	nucleus	36.72	22.56
Zm00001d039156_P001	Maize	nucleus	35.98	22.41
PGSC0003DMT400065601	Potato	nucleus	35.24	22.29
Solyc06g062480.2.1	Tomato	plasma membrane	33.25	22.26
TraesCS1A01G443200.2	Wheat	nucleus	41.44	21.6
TraesCS1B01G477400.1	Wheat	nucleus	41.19	21.59
TraesCS1D01G451200.2	Wheat	nucleus	40.94	21.51
VIT_09s0002g02680.t01	Wine grape	nucleus	39.45	21.49
OQU78543	Sorghum	nucleus	39.7	21.48
GSMUA_Achr5P09620_001	Banana	unclear	43.42	21.45
HORVU1Hr1G094980.4	Barley	nucleus	40.69	21.44
KRH61488	Soybean	nucleus	37.47	21.15
Os06t0142600-01	Rice	nucleus	39.7	21.05
CDY66493	Canola	nucleus	28.78	20.98
PGSC0003DMT400075345	Potato	nucleus	37.22	20.86
CDX76735	Canola	nucleus	30.27	20.82
KRH05522	Soybean	nucleus	35.98	20.34
PGSC0003DMT400012338	Potato	nucleus	32.75	20.21
Bra007774.1-P	Field mustard	nucleus	29.53	20.1
Solyc12g095900.1.1	Tomato	nucleus	35.98	20.08
KRH47177	Soybean	nucleus	33.75	20.03
CDY11505	Canola	nucleus	29.28	19.93
Bra034284.1-P	Field mustard	nucleus	29.53	19.77
CDY35321	Canola	nucleus	28.78	19.37
Zm00001d044232_P001	Maize	nucleus	36.23	19.19
EES03137	Sorghum	nucleus	36.48	18.8
KRH44225	Soybean	nucleus	32.75	18.67
AT2G25930.1	Thale cress	nucleus	32.01	18.56
KRH15494	Soybean	nucleus	14.89	14.35
Os01t0566100-01	Rice	nucleus	8.93	9.09

Protein Annotations

EnsemblPlants:GSMUA_Achr1P05150_001	EnsemblPlants:GSMUA_Achr1T05150_001	EnsemblPlantsGene:GSMUA_Achr1G05150_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	UniParc:UPI000296250B	UniProt:M0RX73
MapMan:15.5.27	MapMan:27.1.6.3.2	:	:	:	:

Description

ELF3 protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G05150_001]

Coordinates

chr1:-:4241020..4244250

Molecular Weight (calculated)

43643.7 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.587

Length

403 amino acids

Sequence
(BLAST)

001: MNGDTVLCHG KGDQSGTQRL NDIAVINDGE AMKTRSQLCS KALPGKGHRA TDISGNCHKE DSAKKNGLLE FRDLERKDDA SEPLMVDTVP GLVISPDDIV
101: GVIGSKHFWK ARRAIINQQR DFAIQVFELH RVIKVQKLIS ASPHLLLEGN PYLSKCSVKP PNKTLPQCNT NPQPEEFRPK DGLQNPKQNK EQPADNIAGV
201: SALPACEDGP LCFPPLGNQW LVPVMSPSEG LVYKPYTGPC PPTGGFMAPL YGRGTPLGAS QVAGDFINSA FGFSASHRPP NVAGSQPSGQ TGQHSRRSCN
301: MSPIPRKEAF PGHAGKFQVS KKSEFQGSTV NIPSEKTQLE ERDQFLLFPT APGASSLNCP LQSNGTDSQT RVIKVVPHNS RSATESAARI FRSIQEGRQQ
401: HDS

Best Arabidopsis Sequence Match ( AT3G21320.1 )
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS

Arabidopsis Description

EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.