Factsheet for Bra031274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51450	Canola	nucleus	99.81	99.81
Bra023887.1-P	Field mustard	nucleus	71.83	74.32
Bra001825.1-P	Field mustard	nucleus	67.54	69.35
AT3G21320.1	Thale cress	nucleus	66.6	66.11
GSMUA_Achr6P33500_001	Banana	mitochondrion	23.13	33.33
GSMUA_Achr1P05150_001	Banana	nucleus	23.51	31.27
Os01t0566050-00	Rice	cytosol, nucleus	14.18	28.04
Solyc06g062480.2.1	Tomato	plasma membrane	26.49	23.59
GSMUA_Achr1P14390_001	Banana	nucleus	22.95	23.12
GSMUA_Achr2P08490_001	Banana	nucleus	17.35	22.79
PGSC0003DMT400012338	Potato	nucleus	26.12	21.44
KRH47177	Soybean	nucleus	26.68	21.06
KRH44225	Soybean	nucleus	27.05	20.51
Zm00001d039156_P001	Maize	nucleus	24.63	20.4
VIT_09s0002g02680.t01	Wine grape	nucleus	27.99	20.27
Bra007774.1-P	Field mustard	nucleus	21.83	19.76
Bra034284.1-P	Field mustard	nucleus	21.83	19.44
Os06t0142600-01	Rice	nucleus	25.93	18.29
OQU78543	Sorghum	nucleus	25.19	18.12
HORVU1Hr1G094980.4	Barley	nucleus	25.19	17.65
Zm00001d044232_P001	Maize	nucleus	24.44	17.21
TraesCS1D01G451200.2	Wheat	nucleus	24.63	17.21
TraesCS1B01G477400.1	Wheat	nucleus	24.63	17.17
TraesCS1A01G443200.2	Wheat	nucleus	24.63	17.08
EES03137	Sorghum	nucleus	24.81	17.01
GSMUA_Achr5P09620_001	Banana	unclear	23.88	15.69
Os01t0566100-01	Rice	nucleus	7.84	10.61

Protein Annotations

EnsemblPlants:Bra031274.1	EnsemblPlants:Bra031274.1-P	EnsemblPlantsGene:Bra031274	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	SEG:seg	UniParc:UPI0002547821
UniProt:M4ER51	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:	:

Description

AT3G21320 (E=1e-210) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR:AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA05:+:16436117..16438217

Molecular Weight (calculated)

59737.2 Da

IEP (calculated)

10.216

GRAVY (calculated)

-0.673

Length

536 amino acids

Sequence
(BLAST)

001: MGGMKDEANR ITIPPLFPRV HVNDTGRGGL PQPFDGKSKR YPLPSPTNKI CDSPSTLSLS LAPQANNTRR HGRPEKSQFT QICNTSPASK FEGKVIHPSA
101: RGSSVTNTKP SSIIQNEYHF KNLTNLDSLK APLVRRSETN PQANTDLSLQ FCTSSSSIAG GGGEAAGSKV ALDNLQIREL LLQDESKNRS LNMMKTQLYR
201: RRAVDVSNVE TQKKLKTVPP REQDVLDRSA IDSLSGMSAS SNDVARVIGD KMFWKMRTYM INQQKIFAAQ VFELHRLIMV QKMVAKSPNL VLESKLNGLR
301: SGSMVASKVK KPNTENHKPV TEEYPEHMKP KLPLPAITKE LMKPIWQQQL LPPPGNQWLV PVMSPSEGLV YKPYAGPCPP PPSAFMVPIY GQDSLDTSAF
401: KFPVSTQFSH NYFPQPNART TVLDQTNPFG QLQRWSSTSS HMTQAIPFSL KKSQESNDSD VHGSTASSPP EKHKFDVLPL FPTEPTHHND EHEQKQQPLH
501: RAIKAIPHNS TSASESAARI FRSIQEERRD SDHMIR

Best Arabidopsis Sequence Match ( AT3G21320.1 )
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS

Arabidopsis Description

EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.