Factsheet for Bra023887.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62750	Canola	nucleus	91.7	97.14
Bra031274.1-P	Field mustard	nucleus	74.32	71.83
Bra001825.1-P	Field mustard	nucleus	70.08	69.54
AT3G21320.1	Thale cress	nucleus	70.46	67.59
GSMUA_Achr6P33500_001	Banana	mitochondrion	23.94	33.33
GSMUA_Achr1P05150_001	Banana	nucleus	24.13	31.02
Os01t0566050-00	Rice	cytosol, nucleus	14.67	28.04
GSMUA_Achr2P08490_001	Banana	nucleus	19.11	24.26
GSMUA_Achr1P14390_001	Banana	nucleus	24.13	23.5
Solyc06g062480.2.1	Tomato	plasma membrane	27.22	23.42
PGSC0003DMT400012338	Potato	nucleus	27.03	21.44
KRH47177	Soybean	nucleus	26.83	20.47
KRH44225	Soybean	nucleus	27.41	20.08
Bra007774.1-P	Field mustard	nucleus	22.78	19.93
VIT_09s0002g02680.t01	Wine grape	nucleus	28.19	19.73
Zm00001d039156_P001	Maize	nucleus	24.52	19.63
Bra034284.1-P	Field mustard	nucleus	22.59	19.44
OQU78543	Sorghum	nucleus	25.68	17.85
Os06t0142600-01	Rice	nucleus	25.68	17.5
EES03137	Sorghum	nucleus	25.68	17.01
Zm00001d044232_P001	Maize	nucleus	24.9	16.95
TraesCS1B01G477400.1	Wheat	nucleus	24.9	16.77
HORVU1Hr1G094980.4	Barley	nucleus	24.71	16.73
TraesCS1A01G443200.2	Wheat	nucleus	24.71	16.56
TraesCS1D01G451200.2	Wheat	nucleus	24.52	16.56
GSMUA_Achr5P09620_001	Banana	unclear	23.75	15.07
Os01t0566100-01	Rice	nucleus	8.3	10.86

Protein Annotations

EnsemblPlants:Bra023887.1	EnsemblPlants:Bra023887.1-P	EnsemblPlantsGene:Bra023887	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PANTHER:PTHR34281:SF2	SEG:seg
UniParc:UPI000254454B	UniProt:M4E533	MapMan:15.5.27	MapMan:27.1.6.3.2	:	:

Description

AT3G21320 (E=2e-100) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR:AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA01:+:20810766..20812647

Molecular Weight (calculated)

57833.0 Da

IEP (calculated)

9.552

GRAVY (calculated)

-0.652

Length

518 amino acids

Sequence
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTERGGL SQPFDGKTMS PYKHYILPSP TDKISDSPST LSLSLPPPAN NACLQTDRPE MNQLSPTYNT SPASNLEGKV
101: DKKGMIYPSP RGSSVKPSSI KQNEYNLTNL DSLKVPVFRL PETDPKANTD LSLQFHSSCT SKSRGEAAGF KPLLNNLDIR ELLLPLQCLE DESNNGSLSV
201: MKTQLYRRRT PKTVPPREQE ASDCSAIDSL SGMSAASNDV ARVIGEKRFW KMRAYMISQQ KIFATQVFEL HRLIMVQKMV AKSPNLVLKS KINGGSKFKR
301: PNTENQKPVT EAYPEHMKPK IPLPFISKEL MTPIWQQQLL PPQGNQWLVP VMSPSEGLVY KPYAGPCPPP PSAFMVPIYG QDLPSRLPAS TQFSHNCFPP
401: RTTVLDQTNP FGQLQRWSST SSHMTQAIPF SLKKSQESND SEVHGSTASS PPEKHKFDVL PLFPTEPTHH TDEYEQKQQP MSRAIKAIPH NSTSASESAA
501: RIFRSIQEER RDSDHMIS

Best Arabidopsis Sequence Match ( AT3G21320.1 )
(BLAST)

001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS

Arabidopsis Description

EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.