Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062480.2.1 | Tomato | plasma membrane | 66.0 | 71.59 |
| GSMUA_Achr6P33500_001 | Banana | mitochondrion | 20.83 | 36.56 |
| Os01t0566050-00 | Rice | cytosol, nucleus | 15.01 | 36.16 |
| GSMUA_Achr1P05150_001 | Banana | nucleus | 20.21 | 32.75 |
| Bra023887.1-P | Field mustard | nucleus | 21.44 | 27.03 |
| GSMUA_Achr2P08490_001 | Banana | nucleus | 16.54 | 26.47 |
| Bra031274.1-P | Field mustard | nucleus | 21.44 | 26.12 |
| CDY51450 | Canola | nucleus | 21.44 | 26.12 |
| AT3G21320.1 | Thale cress | nucleus | 21.59 | 26.11 |
| CDY32422 | Canola | nucleus, plastid | 19.6 | 26.07 |
| CDY56915 | Canola | nucleus | 21.44 | 26.02 |
| CDY62750 | Canola | nucleus | 19.45 | 25.97 |
| CDY48882 | Canola | nucleus | 18.99 | 25.31 |
| PGSC0003DMT400035914 | Potato | nucleus | 25.27 | 25.15 |
| Bra001825.1-P | Field mustard | nucleus | 19.75 | 24.71 |
| VIT_09s0002g02680.t01 | Wine grape | nucleus | 27.41 | 24.19 |
| Zm00001d039156_P001 | Maize | nucleus | 23.43 | 23.65 |
| KRH47177 | Soybean | nucleus | 24.5 | 23.56 |
| GSMUA_Achr1P14390_001 | Banana | nucleus | 19.14 | 23.5 |
| OQU78543 | Sorghum | nucleus | 26.65 | 23.36 |
| TraesCS1A01G443200.2 | Wheat | nucleus | 27.11 | 22.9 |
| TraesCS1B01G477400.1 | Wheat | nucleus | 26.34 | 22.37 |
| TraesCS1D01G451200.2 | Wheat | nucleus | 26.03 | 22.16 |
| HORVU1Hr1G094980.4 | Barley | nucleus | 25.57 | 21.83 |
| PGSC0003DMT400065601 | Potato | nucleus | 21.29 | 21.82 |
| KRH44225 | Soybean | nucleus | 23.43 | 21.64 |
| Os06t0142600-01 | Rice | nucleus | 24.81 | 21.32 |
| PGSC0003DMT400075345 | Potato | nucleus | 22.97 | 20.86 |
| EES03137 | Sorghum | nucleus | 24.2 | 20.2 |
| Zm00001d044232_P001 | Maize | nucleus | 23.43 | 20.11 |
| GSMUA_Achr5P09620_001 | Banana | unclear | 18.99 | 15.2 |
| Os01t0566100-01 | Rice | nucleus | 6.28 | 10.35 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012338 | EnsemblPlantsGene:PGSC0003DMG400004837 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | PANTHER:PTHR34281 | PGSC:PGSC0003DMG400004837 | SEG:seg | UniParc:UPI000294E4A9 |
| UniProt:M1A134 | MapMan:15.5.27 | MapMan:27.1.6.3.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004837]
Coordinates
chr6:-:48910531..48913358
Molecular Weight (calculated)
72061.4 Da
IEP (calculated)
8.924
GRAVY (calculated)
-0.637
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHPDVPPVK SLNPQVLCLK GNLRATSQLN PIHPHSLPYY NSKPSANKLG RENDFCGPNF VTSGKPLYHG NIHKSADKEK MVKPSLKFQS VFEKQYKDTD
101: RMQLNCREHS ISQAGDLAKY QKREHCVKLP APHLSTIETT MVHEAPGPGH GKLNISKSVV SSAPENRCGL VGDLNRCSDS NSESDEDSWI LHKRKAAEDV
201: TDVKHDDATI KRCASIMEGP SCSFLPHGDS HQSPKRVKSS SDCPEDQISG APGVAGEDRS EGISEASSLN SRLVEKMSSN NVIALIGQEL FWKTRRTIAH
301: QQRVFAVQLF ELHRLTKVQK MMARSPDIFF KDNFYLHQPS IKFSSLKNLP CDDVLEPPVV EQKNSTKPNN FELTADNVYL PLRKDNDKKN IPQQSSQKLN
401: VGTPTSRSFV SDPKLAPRSF QPPPGYQWLV PIRSPSEGLV YKPYTGPCPP PGGIIAPAYG SVRPVTLSPH IGGDFANVPY SVPTSHKQGA GIFPGPALFD
501: PSCIQPYSMP VIKPSASSSA IEQMNPISRI RSSEKENSQF MHDVNLVRPH QKSCNISCLK SAAMSDCDRI IQADRGSDMQ GSTASSPPER VQKGALSLFP
601: VTPTAKGSDQ PVQDNDTEQQ IQVIKVVPHN PKSASESAAR IFRSIQEERK MNY
101: RMQLNCREHS ISQAGDLAKY QKREHCVKLP APHLSTIETT MVHEAPGPGH GKLNISKSVV SSAPENRCGL VGDLNRCSDS NSESDEDSWI LHKRKAAEDV
201: TDVKHDDATI KRCASIMEGP SCSFLPHGDS HQSPKRVKSS SDCPEDQISG APGVAGEDRS EGISEASSLN SRLVEKMSSN NVIALIGQEL FWKTRRTIAH
301: QQRVFAVQLF ELHRLTKVQK MMARSPDIFF KDNFYLHQPS IKFSSLKNLP CDDVLEPPVV EQKNSTKPNN FELTADNVYL PLRKDNDKKN IPQQSSQKLN
401: VGTPTSRSFV SDPKLAPRSF QPPPGYQWLV PIRSPSEGLV YKPYTGPCPP PGGIIAPAYG SVRPVTLSPH IGGDFANVPY SVPTSHKQGA GIFPGPALFD
501: PSCIQPYSMP VIKPSASSSA IEQMNPISRI RSSEKENSQF MHDVNLVRPH QKSCNISCLK SAAMSDCDRI IQADRGSDMQ GSTASSPPER VQKGALSLFP
601: VTPTAKGSDQ PVQDNDTEQQ IQVIKVVPHN PKSASESAAR IFRSIQEERK MNY
001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
Arabidopsis Description
EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.