Factsheet for GSMUA_Achr5P09620_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33500_001	Banana	mitochondrion	19.98	43.82
GSMUA_Achr1P05150_001	Banana	nucleus	21.45	43.42
GSMUA_Achr2P08490_001	Banana	nucleus	20.22	40.44
GSMUA_Achr1P14390_001	Banana	nucleus	23.16	35.53
Zm00001d039156_P001	Maize	nucleus	23.28	29.37
VIT_04s0008g00660.t01	Wine grape	nucleus	24.88	28.0
Solyc11g070100.1.1	Tomato	nucleus	20.34	27.53
OQU78543	Sorghum	nucleus	24.88	27.25
Solyc08g065870.2.1	Tomato	nucleus	21.45	27.17
TraesCS1B01G477400.1	Wheat	nucleus	25.49	27.05
HORVU1Hr1G094980.4	Barley	nucleus	25.25	26.93
TraesCS1D01G451200.2	Wheat	nucleus	25.25	26.86
VIT_09s0002g02680.t01	Wine grape	nucleus	24.26	26.76
TraesCS1A01G443200.2	Wheat	nucleus	25.25	26.65
PGSC0003DMT400035914	Potato	nucleus	21.08	26.22
CDX76735	Canola	nucleus	18.63	25.94
Os06t0142600-01	Rice	nucleus	24.02	25.79
CDY66493	Canola	nucleus	17.4	25.68
Bra007774.1-P	Field mustard	nucleus	18.38	25.34
CDY11505	Canola	nucleus	18.26	25.17
KRH15494	Soybean	nucleus	12.87	25.12
Os01t0566050-00	Rice	cytosol, nucleus	8.33	25.09
KRH61488	Soybean	nucleus	21.94	25.07
Os01t0566100-01	Rice	nucleus	12.13	25.0
Zm00001d044232_P001	Maize	nucleus	23.28	24.97
PGSC0003DMT400065601	Potato	nucleus	19.49	24.96
EES03137	Sorghum	nucleus	23.41	24.42
KRH05522	Soybean	nucleus	21.32	24.4
Bra031274.1-P	Field mustard	nucleus	15.69	23.88
CDY51450	Canola	nucleus	15.69	23.88
CDY56915	Canola	nucleus	15.69	23.79
Bra023887.1-P	Field mustard	nucleus	15.07	23.75
CDY48882	Canola	nucleus	14.22	23.67
CDY62750	Canola	nucleus	14.09	23.52
Bra034284.1-P	Field mustard	nucleus	17.28	23.42
CDY32422	Canola	nucleus, plastid	13.97	23.22
CDY35321	Canola	nucleus	17.03	23.21
Bra001825.1-P	Field mustard	nucleus	14.71	22.99
AT3G21320.1	Thale cress	nucleus	14.95	22.59
KRH47177	Soybean	nucleus	18.75	22.53
AT2G25930.1	Thale cress	nucleus	19.0	22.3
PGSC0003DMT400075345	Potato	nucleus	19.36	21.98
KRH44225	Soybean	nucleus	18.75	21.64
Solyc12g095900.1.1	Tomato	nucleus	19.12	21.61
Solyc06g062480.2.1	Tomato	plasma membrane	14.46	19.6
PGSC0003DMT400012338	Potato	nucleus	15.2	18.99

Protein Annotations

MapMan:15.5.27	Gene3D:2.100.10.30	MapMan:27.1.6.3.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0030246	GO:GO:2000028
EnsemblPlantsGene:GSMUA_Achr5G09620_001	EnsemblPlants:GSMUA_Achr5P09620_001	EnsemblPlants:GSMUA_Achr5T09620_001	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom
InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	UniProt:M0SX41	PFAM:PF01419	PFscan:PS51752	PANTHER:PTHR34281
PANTHER:PTHR34281:SF5	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0002949B89	SEG:seg	:

Description

ELF3 protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G09620_001]

Coordinates

chr5:-:6861383..6871618

Molecular Weight (calculated)

89448.2 Da

IEP (calculated)

9.054

GRAVY (calculated)

-0.581

Length

816 amino acids

Sequence
(BLAST)

001: MKGEKDDDRV MGPLFPRLHV NDPDKGGPRA PPRNKMALYE QLSVPSQRFN SASSTLPFPP RNSSNLVPSL PSSQGCGHRK NMFSPLYMTP PVPVRSAEVI
101: NSQTSDRMNS IATRMEFERK SIKQTSSGNL FGTGSAAAEC STQRPRNPNV KKSRGKMLDD VDDIVTKSKN SIINRFGKNS KETSLIEEPK ETKENSASHR
201: AAERLSSSKD CLVRDNTGNL HVTEKSVNGN PELYQENGNL NGCQTLNDHV LLNNAEAQRA RSELCSEASP EKVRQDDTLE PSMVDTVSWL GISPDDIVGV
301: IGPKHFWKAR RAIINQQRVF AIQVFELHRL IKVQKLMAAS PHLLLEGNPY ISRSPVEAPS KTLLPQGNTT SQPEEFRPKD DHQKPKQNVE QPPDDISGIP
401: ALPACEDGPK GAPDDKSSPW CFPPLANQWL VPVMSPSEGL VYKPYMGPCP PTGGFMTPHG SCTPLGMSHV AGDFINSAYG VNNLAGSQPN VQTGQCSRSS
501: CNMSHHPKEA FSGHRGKFRE SKNSELQGST ASSPAEKAQP NGRSTSPLLS TALAANNHNC PSQSSGRDSC TRVIKVDKSI GFCLHFHHII LSILFPPFYF
601: SKRKFDHLLL DILGVIMQAQ KKVVGSSKTL KVGPWGGHGG STWDDGINTG VREITLVYDQ CIDSIRVEYD KNGKPFLAEK HGGNGGSMTT KIKLEHPEEY
701: LTTISGHYCP MAYGGSPVIR SLTFKSNQRT FGPFGVQDGI PFTLPMEGGM IVGFSGRCGW YLDAIGWCIS PFRTVKLYET LQHKIQRIGT MASRTLGNRD
801: DQNGALATTK PRKTYA

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.