CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007774.1-P	Field mustard	nucleus	95.44	95.44
CDX76735	Canola	nucleus	88.85	89.76
CDY66493	Canola	nucleus	55.74	59.67
CDY35321	Canola	nucleus	54.39	53.76
AT2G25930.1	Thale cress	nucleus	54.73	46.62
PGSC0003DMT400035914	Potato	nucleus	36.49	32.93
Solyc08g065870.2.1	Tomato	nucleus	35.3	32.45
VIT_04s0008g00660.t01	Wine grape	nucleus	39.36	32.14
GSMUA_Achr2P08490_001	Banana	nucleus	21.79	31.62
Solyc11g070100.1.1	Tomato	nucleus	31.59	31.01
KRH15494	Soybean	nucleus	21.11	29.9
GSMUA_Achr6P33500_001	Banana	mitochondrion	18.75	29.84
KRH61488	Soybean	nucleus	35.98	29.83
PGSC0003DMT400065601	Potato	nucleus	32.09	29.83
GSMUA_Achr1P14390_001	Banana	nucleus	26.52	29.51
GSMUA_Achr1P05150_001	Banana	nucleus	19.93	29.28
KRH05522	Soybean	nucleus	34.8	28.89
PGSC0003DMT400075345	Potato	nucleus	34.8	28.65
Os01t0566050-00	Rice	cytosol, nucleus	13.01	28.41
Solyc12g095900.1.1	Tomato	nucleus	33.11	27.15
Zm00001d039156_P001	Maize	nucleus	28.72	26.28
OQU78543	Sorghum	nucleus	30.57	24.3
CDY32422	Canola	nucleus, plastid	19.93	24.03
HORVU1Hr1G094980.4	Barley	nucleus	30.74	23.79
TraesCS1B01G477400.1	Wheat	nucleus	30.57	23.54
Zm00001d044232_P001	Maize	nucleus	30.07	23.39
TraesCS1D01G451200.2	Wheat	nucleus	30.24	23.34
CDY48882	Canola	nucleus	19.26	23.27
TraesCS1A01G443200.2	Wheat	nucleus	30.24	23.16
EES03137	Sorghum	nucleus	30.41	23.02
Os06t0142600-01	Rice	nucleus	29.22	22.76
CDY62750	Canola	nucleus	18.41	22.29
CDY56915	Canola	nucleus	19.59	21.56
CDY51450	Canola	nucleus	19.43	21.46
Os01t0566100-01	Rice	nucleus	12.67	18.94
GSMUA_Achr5P09620_001	Banana	unclear	25.17	18.26

Protein Annotations

EnsemblPlants:CDY11505	EnsemblPlantsGene:GSBRNA2T00049585001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:2000028	ncoils:Coil	PANTHER:PTHR34281	ProteinID:CDY11505	ProteinID:CDY11505.1
SEG:seg	UniParc:UPI0004EDB977	UniProt:A0A078FAU7	MapMan:15.5.27	MapMan:27.1.6.3.2	:

Description

BnaA09g40710DBnaA09g40710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAU7]

Coordinates

chrLK032011:+:726423..729492

Molecular Weight (calculated)

65119.2 Da

IEP (calculated)

7.331

GRAVY (calculated)

-0.856

Length

592 amino acids

Sequence
(BLAST)

001: MKRGKEEEKR LEPMFPRLHV KDAEKGGPRA PPRNKMALYE QLSIPSQRFT SSDRVGGSLP RNTSPLLPPG PSSNQGTDNF VTQMPLMENV RTSPAQHDHQ
101: RKIAREEDDF AVPVFINSRR PGRGKSGLKR GVGLAANSAT EDMDLASTSD RVDDGRINNG VESHMAASEE EGHGNLNDEY CTSGGGGYTS LQQEINNEEE
201: ASDDNSMVDS VSSLDVSPDE VVGVLGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQRL IAASPDVLVD DMSYVGKVAA KSYPVKKLHL PSGFIVKPPL
301: PQVIKHRSSD YSEKTDQHKM ECSAENVVGR LPNQGQGHHH QQPSNYMMPF ATNQPNANGC YYPPQPPPPS GGNQQWLIPV MSPSEGLIYK PHPGPGPGHT
401: GLVCGGYYGH FMPAPMFMGG GGGQPPPFHP GMGFPSHGNG YFPPYGGIMM NPYYSGQQQQ QQPNEQMNNN IQQQSSVNEA TSQQQQQPTK SYPRAKKSRQ
501: EGISGKKKSF QPFSAVDDDD DDDNDKINNA APPTEEMMTT TTTTTTTVTQ TTRDGAGVTR VIKVVPHNAN LASENAARIF RSIQEERKQY YP

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.