CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034284.1-P	Field mustard	nucleus	93.99	93.52
CDY66493	Canola	nucleus	70.12	75.95
CDX76735	Canola	nucleus	53.59	54.78
CDY11505	Canola	nucleus	53.76	54.39
AT2G25930.1	Thale cress	nucleus	54.76	47.19
GSMUA_Achr2P08490_001	Banana	nucleus	22.7	33.33
PGSC0003DMT400035914	Potato	nucleus	34.89	31.86
Solyc08g065870.2.1	Tomato	nucleus	33.22	30.9
Solyc11g070100.1.1	Tomato	nucleus	31.05	30.85
GSMUA_Achr1P14390_001	Banana	nucleus	27.21	30.64
VIT_04s0008g00660.t01	Wine grape	nucleus	36.39	30.07
GSMUA_Achr6P33500_001	Banana	mitochondrion	18.36	29.57
PGSC0003DMT400065601	Potato	nucleus	30.88	29.04
GSMUA_Achr1P05150_001	Banana	nucleus	19.37	28.78
KRH61488	Soybean	nucleus	33.89	28.43
KRH15494	Soybean	nucleus	19.7	28.23
Os01t0566050-00	Rice	cytosol, nucleus	12.69	28.04
KRH05522	Soybean	nucleus	33.22	27.91
PGSC0003DMT400075345	Potato	nucleus	33.39	27.82
Zm00001d039156_P001	Maize	nucleus	29.55	27.36
Solyc12g095900.1.1	Tomato	nucleus	32.55	27.01
OQU78543	Sorghum	nucleus	31.55	25.37
Os06t0142600-01	Rice	nucleus	30.72	24.21
Zm00001d044232_P001	Maize	nucleus	29.72	23.39
HORVU1Hr1G094980.4	Barley	nucleus	29.55	23.14
EES03137	Sorghum	nucleus	29.88	22.89
TraesCS1A01G443200.2	Wheat	nucleus	29.38	22.77
TraesCS1B01G477400.1	Wheat	nucleus	29.22	22.76
TraesCS1D01G451200.2	Wheat	nucleus	29.05	22.69
CDY62750	Canola	nucleus	18.36	22.49
CDY51450	Canola	nucleus	19.37	21.64
CDY48882	Canola	nucleus	17.7	21.63
CDY32422	Canola	nucleus, plastid	17.7	21.59
CDY56915	Canola	nucleus	19.2	21.38
Os01t0566100-01	Rice	nucleus	12.35	18.69
GSMUA_Achr5P09620_001	Banana	unclear	23.21	17.03

Protein Annotations

EnsemblPlants:CDY35321	EnsemblPlantsGene:GSBRNA2T00058288001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PANTHER:PTHR34281:SF2	ProteinID:CDY35321	ProteinID:CDY35321.1
SEG:seg	UniParc:UPI0004EEAD7D	UniProt:A0A078HC32	MapMan:15.5.27	MapMan:27.1.6.3.2	:

Description

BnaA04g15260DBnaA04g15260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC32]

Coordinates

chrLK032350:-:74883..78013

Molecular Weight (calculated)

66356.2 Da

IEP (calculated)

7.127

GRAVY (calculated)

-0.920

Length

599 amino acids

Sequence
(BLAST)

001: MKRGKEEEEK KLEPMFPRLH VNDADKGGGP RAPPRNKMAL YEHLTIPSHR FTDHHSSSPR HTNTLFPPPP PVPSNQPCGV ERNLTSQHLD SSASGHVTQM
101: SSMEYVTTSA HRRRDQRKTL REEDDFAVPV YDNDSSTRFQ SPGRRNGEKR TTLFGDQAKG SSSSKRHGMD LEKSASGCER VNASLLRQES TSSRLELDQD
201: GDETGVMETD DGVESHGDPN DVDNDDVSDD SISSVDVSPD EVVGVIGQKR FWRARKAIAN QQRIFAVQLF ELHRLIKVQR LIASSSDVLL DEISYLGNVP
301: VKKLLPSEFI VKPPPLPQVT KHRRGDSEKT DQDKMECSAE NVVGKSSNQG QQHQPSNYMP FASNPPTAVN GCYYPPPPSG GNQQWLIPVM SPSEGLIYKP
401: HPGPGPPVCG GYYGHFMPAP MMMGSFMGGG PPPFHPGVGN GYFPPYGMMN PYGSGHQQQQ QPSEQMNQFV HPVNTQQQSS VNEAISQQQP TKSYPRARKS
501: RQRSTGSSPR GPEGISDTNS FRPFSVVDDD DNNEPEQMMT TTTTTTRTTV TQTTRDGGAV TRVIKVVPHN AKLASENAAR IFRSIQEERK HYDSFSNHS

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.