CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35321	Canola	nucleus	75.95	70.12
CDX76735	Canola	nucleus	59.67	56.31
CDY11505	Canola	nucleus	59.67	55.74
AT2G25930.1	Thale cress	nucleus	57.87	46.04
PGSC0003DMT400035914	Potato	nucleus	37.25	31.4
GSMUA_Achr2P08490_001	Banana	nucleus	22.6	30.64
Solyc08g065870.2.1	Tomato	nucleus	35.62	30.59
VIT_04s0008g00660.t01	Wine grape	nucleus	39.78	30.34
GSMUA_Achr1P14390_001	Banana	nucleus	28.57	29.7
GSMUA_Achr6P33500_001	Banana	mitochondrion	19.89	29.57
Os01t0566050-00	Rice	cytosol, nucleus	14.47	29.52
Solyc11g070100.1.1	Tomato	nucleus	31.83	29.19
GSMUA_Achr1P05150_001	Banana	nucleus	20.98	28.78
PGSC0003DMT400065601	Potato	nucleus	32.73	28.41
KRH61488	Soybean	nucleus	36.53	28.29
PGSC0003DMT400075345	Potato	nucleus	36.17	27.82
KRH05522	Soybean	nucleus	35.62	27.63
KRH15494	Soybean	nucleus	20.61	27.27
Solyc12g095900.1.1	Tomato	nucleus	35.44	27.15
Zm00001d039156_P001	Maize	nucleus	29.84	25.5
OQU78543	Sorghum	nucleus	32.19	23.89
Os06t0142600-01	Rice	nucleus	32.55	23.68
Zm00001d044232_P001	Maize	nucleus	32.01	23.26
HORVU1Hr1G094980.4	Barley	nucleus	31.65	22.88
TraesCS1B01G477400.1	Wheat	nucleus	31.46	22.63
CDY32422	Canola	nucleus, plastid	20.07	22.61
TraesCS1A01G443200.2	Wheat	nucleus	31.46	22.51
CDY62750	Canola	nucleus	19.89	22.49
CDY51450	Canola	nucleus	21.7	22.39
EES03137	Sorghum	nucleus	31.65	22.38
CDY56915	Canola	nucleus	21.7	22.3
TraesCS1D01G451200.2	Wheat	nucleus	30.92	22.29
CDY48882	Canola	nucleus	19.71	22.24
Os01t0566100-01	Rice	nucleus	13.02	18.18
GSMUA_Achr5P09620_001	Banana	unclear	25.68	17.4

Protein Annotations

EnsemblPlants:CDY66493	EnsemblPlantsGene:GSBRNA2T00054438001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	PANTHER:PTHR34281:SF2	ProteinID:CDY66493	ProteinID:CDY66493.1
SEG:seg	UniParc:UPI0004EF017E	UniProt:A0A078JFU9	MapMan:15.5.27	MapMan:27.1.6.3.2	:

Description

BnaCnng51090DBnaCnng51090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFU9]

Coordinates

chrLK035292:-:882..3917

Molecular Weight (calculated)

61175.5 Da

IEP (calculated)

8.257

GRAVY (calculated)

-0.857

Length

553 amino acids

Sequence
(BLAST)

001: MKRGKEEEEK KKLEPMFPRL HVNDADKGGG PRAPPRNKMA LYEHLTTPSH RFTDHSSSPR HTNTLFPPPP GPSNQPCGVE RNLTSQHLDS SASGHVTQMS
101: SMENVTTLAH RRGDQRKTLR EEDDFAVPVY DNDSSRRFQC PLEKSASGCE RVNASLLRQE STSSRLDHET GVMETDDGVE SHGNPNDVDD DDDSISSIDV
201: SPDEVVGVLG QKRFWRARKA IANQQRIFAV QLFELHRLIK VQRLIASSSD VLLDEISYLG NVPVKKLLPS EFILKPPPLP QVTKHRSSDS EKTDQNKMES
301: SAENVVGKSS NQGQQHQPSN YMPFASNPPA ANGCYYPPQH PPPSGGNQQW LIPVMSPSEG LIYKPHPGPG HTGSPVCGGY YGHFMPALMI MGSFMDGGPP
401: PFHPGVGNGY FPPYGMMNPY GSGHQQQQQP NEQMNQFVHP VNTQQQSSVN EAISQQQPTQ SYPRARKSRQ RSTGISPSGI SGTNSFRPLS QMMTTTTTTT
501: RTTVTQTTRD GGGVTRVIKV VPHNAKLASE NAARIFRSIQ EERKHYDSFS NHS

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.