Factsheet for Os06t0142600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0566050-00	Rice	cytosol, nucleus	28.68	80.44
Os01t0566100-01	Rice	nucleus	37.11	71.21
Zm00001d044232_P001	Maize	nucleus	53.42	53.35
EES03137	Sorghum	nucleus	53.68	52.17
HORVU1Hr1G094980.4	Barley	nucleus	49.74	49.41
TraesCS1B01G477400.1	Wheat	nucleus	49.08	48.5
TraesCS1D01G451200.2	Wheat	nucleus	48.55	48.11
TraesCS1A01G443200.2	Wheat	nucleus	48.42	47.61
GSMUA_Achr6P33500_001	Banana	mitochondrion	19.47	39.78
GSMUA_Achr1P05150_001	Banana	nucleus	21.05	39.7
GSMUA_Achr2P08490_001	Banana	nucleus	20.92	38.97
GSMUA_Achr1P14390_001	Banana	nucleus	24.87	35.53
Solyc08g065870.2.1	Tomato	nucleus	29.08	34.32
PGSC0003DMT400035914	Potato	nucleus	29.47	34.15
CDY66493	Canola	nucleus	23.68	32.55
VIT_04s0008g00660.t01	Wine grape	nucleus	30.92	32.41
Solyc11g070100.1.1	Tomato	nucleus	25.0	31.51
PGSC0003DMT400065601	Potato	nucleus	26.32	31.4
KRH61488	Soybean	nucleus	28.95	30.81
Bra034284.1-P	Field mustard	nucleus	24.34	30.73
CDY35321	Canola	nucleus	24.21	30.72
Bra007774.1-P	Field mustard	nucleus	23.03	29.56
CDX76735	Canola	nucleus	22.76	29.52
CDY11505	Canola	nucleus	22.76	29.22
KRH47177	Soybean	nucleus	25.79	28.87
KRH05522	Soybean	nucleus	26.97	28.75
PGSC0003DMT400075345	Potato	nucleus	26.84	28.37
Solyc12g095900.1.1	Tomato	nucleus	26.71	28.12
AT2G25930.1	Thale cress	nucleus	25.53	27.91
CDY32422	Canola	nucleus, plastid	18.03	27.9
KRH44225	Soybean	nucleus	25.66	27.58
CDY48882	Canola	nucleus	17.5	27.14
CDY56915	Canola	nucleus	19.21	27.14
VIT_09s0002g02680.t01	Wine grape	nucleus	25.79	26.49
KRH15494	Soybean	nucleus	14.47	26.32
Bra031274.1-P	Field mustard	nucleus	18.29	25.93
CDY51450	Canola	nucleus	18.29	25.93
Solyc06g062480.2.1	Tomato	plasma membrane	20.39	25.75
Bra023887.1-P	Field mustard	nucleus	17.5	25.68
Bra001825.1-P	Field mustard	nucleus	17.63	25.67
CDY62750	Canola	nucleus	16.18	25.15
AT3G21320.1	Thale cress	nucleus	17.76	25.0
PGSC0003DMT400012338	Potato	nucleus	21.32	24.81
GSMUA_Achr5P09620_001	Banana	unclear	25.79	24.02

Protein Annotations

MapMan:15.5.27	MapMan:27.1.6.3.2	EntrezGene:4340087	ProteinID:AGW16338.1	ProteinID:BAA83571.1	ProteinID:BAF18684.2
ProteinID:BAL63007.1	ProteinID:BAS96101.1	ProteinID:EAZ35794.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0048576	GO:GO:0048578	GO:GO:2000028	EnsemblPlantsGene:Os06g0142600	EnsemblPlants:Os06t0142600-01
PANTHER:PTHR34281	PANTHER:PTHR34281:SF5	UniProt:Q9SNQ6	UniParc:UPI000009D28B	RefSeq:XP_015642489.1	SEG:seg

Description

HEADING DATE 3BHomolog of the Arabidopsis EARLY FLOWERING 3 protein, Photoperiodic flowering, Short-day/long-day promotion (Os06t0142600-01)

Coordinates

chr6:-:2234581..2239058

Molecular Weight (calculated)

82383.1 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.771

Length

760 amino acids

Sequence
(BLAST)

001: MATRGGGGGG GGKEAKGKVM GPLFPRLHVN DAAKGGGPRA PPRNKMALYE QFTVPSHRFS GGGGGGGVGG SPAHSTSAAS QSQSQSQVYG RDSSLFQPFN
101: VPSNRPGHST EKINSDKINK KISGSRKELG MLSSQTKGMD IYASRSTAEA PQRRAENTIK SSSGKRLADD DEFMVPSVFN SRFPQYSTQE NAGVQDQSTP
201: LVAANPHKSP STVSKSSTKC YNTVSKKLER IHVSDVKSRT PLKDKEMEAA QTSKNVEVEK SSSFHASKDM FESRHAKVYP KMDKTGIIND SDEPHGGNSG
301: HQATSRNGGS MKFQNPPMRR NEISSNPSSE NTDRHYNLPQ GGIEETGTKR KRLLEQHDAE KSDDVSRLLE QHDAENIDDV SDSSVECITG WEISPDKIVG
401: AIGTKHFWKA RRAIMNQQRV FAVQVFELHK LVKVQKLIAA SPHVLIESDP CLGNALLGSK NKLVEENLKA QPLLVATIDD VEPSLQQPEV SKENTEDSPP
501: SPHDTGLGSG QRDQAATNGV SKSNRRATPV ASDNKQNNWG VQLQPPQNQW LVPVMSPLEG LVYKPYSGPC PPAGSILAPF YANCTPLSLP STAGDFMNSA
601: YGVPMPHQPQ HMGAPGPPSM PMNYFPPFSI PVMNPTAPAP VVEQGRHPSM PQPYGNFEQQ SWISCNMSHP SGIWRFHASR DSEAQASSAS SPFDRFQCSG
701: SGPVSAFPTV SAQNNQPQPS YSSRDNQTNV IKVVPHNSRT ASESAARIFR SIQMERQRDD

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.