Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023887.1-P | Field mustard | nucleus | 67.59 | 70.46 |
| CDY48882 | Canola | nucleus | 63.89 | 70.41 |
| CDY62750 | Canola | nucleus | 63.52 | 70.14 |
| Bra001825.1-P | Field mustard | nucleus | 65.37 | 67.62 |
| CDY32422 | Canola | nucleus, plastid | 61.48 | 67.62 |
| CDY51450 | Canola | nucleus | 66.3 | 66.79 |
| Bra031274.1-P | Field mustard | nucleus | 66.11 | 66.6 |
| CDY56915 | Canola | nucleus | 64.44 | 64.68 |
| GSMUA_Achr6P33500_001 | Banana | mitochondrion | 22.59 | 32.8 |
| GSMUA_Achr1P05150_001 | Banana | nucleus | 22.59 | 30.27 |
| Os01t0566050-00 | Rice | cytosol, nucleus | 13.7 | 27.31 |
| Solyc06g062480.2.1 | Tomato | plasma membrane | 26.67 | 23.92 |
| GSMUA_Achr2P08490_001 | Banana | nucleus | 17.59 | 23.28 |
| GSMUA_Achr1P14390_001 | Banana | nucleus | 21.67 | 21.99 |
| PGSC0003DMT400012338 | Potato | nucleus | 26.11 | 21.59 |
| KRH47177 | Soybean | nucleus | 26.48 | 21.06 |
| KRH44225 | Soybean | nucleus | 26.48 | 20.23 |
| Zm00001d039156_P001 | Maize | nucleus | 23.33 | 19.47 |
| VIT_09s0002g02680.t01 | Wine grape | nucleus | 26.3 | 19.19 |
| Os06t0142600-01 | Rice | nucleus | 25.0 | 17.76 |
| OQU78543 | Sorghum | nucleus | 24.44 | 17.72 |
| AT2G25930.1 | Thale cress | nucleus | 22.78 | 17.7 |
| HORVU1Hr1G094980.4 | Barley | nucleus | 24.63 | 17.39 |
| TraesCS1B01G477400.1 | Wheat | nucleus | 24.44 | 17.17 |
| Zm00001d044232_P001 | Maize | nucleus | 24.07 | 17.08 |
| TraesCS1D01G451200.2 | Wheat | nucleus | 24.26 | 17.08 |
| EES03137 | Sorghum | nucleus | 24.63 | 17.01 |
| TraesCS1A01G443200.2 | Wheat | nucleus | 24.26 | 16.95 |
| GSMUA_Achr5P09620_001 | Banana | unclear | 22.59 | 14.95 |
| Os01t0566100-01 | Rice | nucleus | 7.59 | 10.35 |
Protein Annotations
| MapMan:15.5.27 | MapMan:27.1.6.3.2 | EntrezGene:821686 | UniProt:A0A178V8Z3 | ProteinID:AEE76492.1 | ArrayExpress:AT3G21320 |
| EnsemblPlantsGene:AT3G21320 | RefSeq:AT3G21320 | TAIR:AT3G21320 | RefSeq:AT3G21320-TAIR-G | EnsemblPlants:AT3G21320.1 | TAIR:AT3G21320.1 |
| EMBL:AY800623 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:2000028 | RefSeq:NP_188769.1 | ProteinID:OAP02376.1 | PO:PO:0000293 | PANTHER:PTHR34281 | PANTHER:PTHR34281:SF2 |
| UniProt:Q5Q0C8 | UniParc:UPI00001634AE | SEG:seg | : | : | : |
Description
EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
Coordinates
chr3:-:7498812..7501888
Molecular Weight (calculated)
60195.5 Da
IEP (calculated)
10.084
GRAVY (calculated)
-0.676
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.