Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51450 | Canola | nucleus | 93.31 | 93.66 |
| CDY62750 | Canola | nucleus | 65.43 | 71.98 |
| CDY48882 | Canola | nucleus | 63.2 | 69.39 |
| CDY32422 | Canola | nucleus, plastid | 60.78 | 66.6 |
| AT3G21320.1 | Thale cress | nucleus | 64.68 | 64.44 |
| GSMUA_Achr6P33500_001 | Banana | mitochondrion | 23.42 | 33.87 |
| GSMUA_Achr1P05150_001 | Banana | nucleus | 23.79 | 31.76 |
| Os01t0566050-00 | Rice | cytosol, nucleus | 14.87 | 29.52 |
| Solyc06g062480.2.1 | Tomato | plasma membrane | 26.39 | 23.59 |
| GSMUA_Achr1P14390_001 | Banana | nucleus | 22.86 | 23.12 |
| GSMUA_Achr2P08490_001 | Banana | nucleus | 17.47 | 23.04 |
| CDY66493 | Canola | nucleus | 22.3 | 21.7 |
| PGSC0003DMT400012338 | Potato | nucleus | 26.02 | 21.44 |
| KRH47177 | Soybean | nucleus | 26.39 | 20.91 |
| KRH44225 | Soybean | nucleus | 27.14 | 20.65 |
| VIT_09s0002g02680.t01 | Wine grape | nucleus | 28.07 | 20.41 |
| Zm00001d039156_P001 | Maize | nucleus | 24.35 | 20.25 |
| CDX76735 | Canola | nucleus | 21.56 | 19.8 |
| CDY11505 | Canola | nucleus | 21.56 | 19.59 |
| Os06t0142600-01 | Rice | nucleus | 27.14 | 19.21 |
| CDY35321 | Canola | nucleus | 21.38 | 19.2 |
| OQU78543 | Sorghum | nucleus | 25.28 | 18.25 |
| HORVU1Hr1G094980.4 | Barley | nucleus | 25.84 | 18.17 |
| TraesCS1D01G451200.2 | Wheat | nucleus | 25.65 | 17.99 |
| TraesCS1B01G477400.1 | Wheat | nucleus | 25.65 | 17.95 |
| TraesCS1A01G443200.2 | Wheat | nucleus | 25.65 | 17.85 |
| Zm00001d044232_P001 | Maize | nucleus | 25.09 | 17.74 |
| EES03137 | Sorghum | nucleus | 25.46 | 17.52 |
| GSMUA_Achr5P09620_001 | Banana | unclear | 23.79 | 15.69 |
| Os01t0566100-01 | Rice | nucleus | 8.36 | 11.36 |
Protein Annotations
| EnsemblPlants:CDY56915 | EnsemblPlantsGene:GSBRNA2T00020264001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | PANTHER:PTHR34281 | ProteinID:CDY56915 | ProteinID:CDY56915.1 | SEG:seg |
| UniParc:UPI0004EF3BE5 | UniProt:A0A078J148 | MapMan:15.5.27 | MapMan:27.1.6.3.2 | : | : |
Description
BnaCnng31360DBnaCnng31360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J148]
Coordinates
chrLK033531:+:1352..3640
Molecular Weight (calculated)
59776.1 Da
IEP (calculated)
10.122
GRAVY (calculated)
-0.670
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGMKDEANR ITIPPLFPRA HVNDTGRGGL PQPFAGKSKR YPLPSPTNKI CDSPSTLSLS LAPQANNTRL HGRPEKSQFT QICNTSPASK FEGKVNHPSA
101: RGSSVTNTKS SSIIQNEYHF KNLTNLDSLK VPLVRRSETN PQANTDLSLQ FCNSSSCIDG GGGVAAGSKV ALNNLHIREL LLQDESKRGS LNMMKTQLYR
201: RRALDVFNIE TQKKLKTVPP REQDVSDSSA IDSLSGIGAS SNDVARVIGD KMFWKMRTYM INQQKIFAAQ VFELHRLIMV QKMVAKSPNL VLESKLNGLR
301: RGTMVASKVK KPNTENHKPV TEEYPEHMKP KLPLPSITNE LMKPIWQQQL LPPPGNQWLV PVMSPSEGLV YKPYAGPCPP PPSAFMVPIY GQDSPNTSAF
401: KFPVSTQFSH NYFPQPNART AVLDQTNPFG QLQRWSSTSS HMTQAIPFSL KKSQESNDSD VHGSTASSPP EKPKFDVLPL FPTEPTHHND EHEHEQKQQP
501: LHRAIKAIPH NSTSASESAA RIFRSIQEER RDSDHMNS
101: RGSSVTNTKS SSIIQNEYHF KNLTNLDSLK VPLVRRSETN PQANTDLSLQ FCNSSSCIDG GGGVAAGSKV ALNNLHIREL LLQDESKRGS LNMMKTQLYR
201: RRALDVFNIE TQKKLKTVPP REQDVSDSSA IDSLSGIGAS SNDVARVIGD KMFWKMRTYM INQQKIFAAQ VFELHRLIMV QKMVAKSPNL VLESKLNGLR
301: RGTMVASKVK KPNTENHKPV TEEYPEHMKP KLPLPSITNE LMKPIWQQQL LPPPGNQWLV PVMSPSEGLV YKPYAGPCPP PPSAFMVPIY GQDSPNTSAF
401: KFPVSTQFSH NYFPQPNART AVLDQTNPFG QLQRWSSTSS HMTQAIPFSL KKSQESNDSD VHGSTASSPP EKPKFDVLPL FPTEPTHHND EHEHEQKQQP
501: LHRAIKAIPH NSTSASESAA RIFRSIQEER RDSDHMNS
001: MGGMKDEAKR ITIPPLFPRV HVNDTGRGGL SQQFDGKTMS LVSSKRPNLP SPTNNISDSL STFSLSLPPP PNNARLIDGP EKNQFSPIYN TKFEGKLNKK
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
101: GINYTSPKGS SVTNTKPSSI KQNEYLKNLT SLDSIKSPIV IHSEIDPQAN TDLSLQFCTS GSSKPGGEAV VGSKILLSER LEDENQNGSP NVMKTQSYRR
201: NFAEFNNETQ KKPKTLPRRE QVASNCSAIE SLSGISASSY DIARVIGEKR FWKMRTYMIN QQKIFAGQVF ELHRLIMVQK MVAKSPNLFL ESKLNGVKHG
301: TMRSSHQLAM AASKVRKPNT ENHKPVPEEY PEHMKPKLPL PSISKELVTP IWPQQLLPPP GNQWLVPVIT DSDGLVYKPF PGPCPPSSSA FMVPVYGQDS
401: LETPFRFPVS SPFSHSYFPP PNARTTVDQT NPFGQFQRWS NTSSHMTQAI PFSLKKSQES NDSDIHGSTA SSPPEKHKLE VLPLFPTEPT HQTDEYKQKQ
501: QPMLRAIKAV PHNSTSASES AARIFRFIQE ERRDSDHMIS
Arabidopsis Description
EARLY FLOWERING protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0C8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.