Factsheet for VIT_09s0002g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33500_001	Banana	mitochondrion	20.68	41.13
GSMUA_Achr2P08490_001	Banana	nucleus	22.16	40.2
GSMUA_Achr1P05150_001	Banana	nucleus	21.49	39.45
VIT_04s0008g00660.t01	Wine grape	nucleus	35.41	36.14
GSMUA_Achr1P14390_001	Banana	nucleus	25.95	36.09
Os01t0566050-00	Rice	cytosol, nucleus	12.97	35.42
Zm00001d039156_P001	Maize	nucleus	26.89	30.76
KRH47177	Soybean	nucleus	27.16	29.6
CDY48882	Canola	nucleus	19.46	29.39
OQU78543	Sorghum	nucleus	29.46	29.26
CDY32422	Canola	nucleus, plastid	19.32	29.12
TraesCS1D01G451200.2	Wheat	nucleus	29.73	28.68
HORVU1Hr1G094980.4	Barley	nucleus	29.59	28.63
TraesCS1B01G477400.1	Wheat	nucleus	29.59	28.48
TraesCS1A01G443200.2	Wheat	nucleus	29.73	28.46
Solyc06g062480.2.1	Tomato	plasma membrane	23.11	28.41
CDY62750	Canola	nucleus	18.65	28.22
Bra023887.1-P	Field mustard	nucleus	19.73	28.19
Bra001825.1-P	Field mustard	nucleus	19.86	28.16
KRH44225	Soybean	nucleus	26.89	28.15
CDY56915	Canola	nucleus	20.41	28.07
CDY51450	Canola	nucleus	20.27	27.99
Bra031274.1-P	Field mustard	nucleus	20.27	27.99
PGSC0003DMT400012338	Potato	nucleus	24.19	27.41
Zm00001d044232_P001	Maize	nucleus	27.16	26.41
AT3G21320.1	Thale cress	nucleus	19.19	26.3
EES03137	Sorghum	nucleus	27.7	26.21
Os06t0142600-01	Rice	nucleus	26.49	25.79
GSMUA_Achr5P09620_001	Banana	unclear	26.76	24.26
Os01t0566100-01	Rice	nucleus	10.14	18.94

Protein Annotations

EntrezGene:100256592	wikigene:100256592	MapMan:15.5.27	MapMan:27.1.6.3.2	EMBL:AM438956	ProteinID:CAN65004
ProteinID:CAN65004.1	ProteinID:CCB59368	ProteinID:CCB59368.1	UniProt:F6HY45	EMBL:FN596494	GO:GO:0000003
GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
GO:GO:2000028	EntrezGene:LOC100256592	wikigene:LOC100256592	PANTHER:PTHR34281	UniParc:UPI000210A766	ArrayExpress:VIT_09s0002g02680
EnsemblPlantsGene:VIT_09s0002g02680	EnsemblPlants:VIT_09s0002g02680.t01	unigene:Vvi.16277	RefSeq:XP_002276544	RefSeq:XP_002276544.2	RefSeq:XP_002276544.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:2436506..2440958

Molecular Weight (calculated)

80864.8 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.651

Length

740 amino acids

Sequence
(BLAST)

001: MKKGKDEGKV MSPLFPRLHV NDAEKGGPRA PPRNKMALYE QLSVPKVPSR STVILPLLPN NSGSLVPSAP STQGSGHERN VVTPFCYTPT SAHSDENHHF
101: HSSSGVNMSF ELTNLEQKSG TFYHIPNVTG QLPLQANCSY SQPHSLSKLK NHRGEDDSEV PTFCQSGIIP DYYNAPQNMN KERATCLDLN SSVQLESACG
201: KHQRNLNVSH SRESISATAS SGLLTRDEIF EPSKRARTSL TKENKRNVVV DTNRLEDIHD SLHQGSMTLP ENTDLPNPSK AVGGGYVSTS PKPSLLDGHR
301: RSGGLEHELE EQKESESLQM GSIDRNCHVS NANMVGSMLG FDISPDDVVG IIGHKHFWKT RNAIVNQQRV FAVQVFELHR LIKVQRLIAG SPEGQLDNNL
401: YLAEPASSTK KLPSESPTKK LPSESVQQLP SQIADPKNGS QKQDSNNEGA VKDAVGNPPF ASPVDVDKIY AAQQTNQRPL ENQPPVSMAT DTQPTSWCFH
501: PSQGNQWLVP VMSPSEGLIY KPYAGQCSPT PRLMSPFYGN YRPVNLTVMG GDFFNTTYGI PISLQQGIEI VPSNPFLGQT YFPPYGKPLV NPSTSGSAVE
601: QMNLSVGDQS SRPNNHVSVG DINATVQSVH YQSLGNMPSQ KSGGILGCFG KFQASKSSEL QVSTASTPSK RAQADALPLF PVAPKIQESD QLDQIHGNEK
701: QTRAIKVVPH KHKSASESAA RIFRSIQEER NQRSTQGDNY

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.