CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61488	Soybean	nucleus	57.78	57.7
KRH15494	Soybean	nucleus	33.66	57.42
VIT_04s0008g00660.t01	Wine grape	nucleus	43.9	43.17
PGSC0003DMT400035914	Potato	nucleus	37.59	40.85
Solyc08g065870.2.1	Tomato	nucleus	36.04	39.91
PGSC0003DMT400065601	Potato	nucleus	35.2	39.4
Solyc11g070100.1.1	Tomato	nucleus	32.68	38.64
GSMUA_Achr6P33500_001	Banana	mitochondrion	19.64	37.63
GSMUA_Achr1P14390_001	Banana	nucleus	27.07	36.28
GSMUA_Achr1P05150_001	Banana	nucleus	20.34	35.98
CDX76735	Canola	nucleus	29.45	35.84
Bra007774.1-P	Field mustard	nucleus	29.59	35.64
CDY66493	Canola	nucleus	27.63	35.62
GSMUA_Achr2P08490_001	Banana	nucleus	19.92	34.8
CDY11505	Canola	nucleus	28.89	34.8
Os01t0566050-00	Rice	cytosol, nucleus	13.18	34.69
PGSC0003DMT400075345	Potato	nucleus	34.92	34.63
Solyc12g095900.1.1	Tomato	nucleus	34.92	34.49
CDY35321	Canola	nucleus	27.91	33.22
AT2G25930.1	Thale cress	nucleus	31.98	32.81
Bra034284.1-P	Field mustard	nucleus	27.63	32.72
Zm00001d039156_P001	Maize	nucleus	28.61	31.53
OQU78543	Sorghum	nucleus	31.28	29.93
HORVU1Hr1G094980.4	Barley	nucleus	30.01	27.97
TraesCS1B01G477400.1	Wheat	nucleus	29.73	27.57
TraesCS1A01G443200.2	Wheat	nucleus	29.73	27.43
TraesCS1D01G451200.2	Wheat	nucleus	29.31	27.25
Os06t0142600-01	Rice	nucleus	28.75	26.97
Zm00001d044232_P001	Maize	nucleus	28.33	26.54
KRH47177	Soybean	nucleus	25.11	26.36
EES03137	Sorghum	nucleus	27.91	25.45
KRH44225	Soybean	nucleus	24.26	24.47
GSMUA_Achr5P09620_001	Banana	unclear	24.4	21.32
Os01t0566100-01	Rice	nucleus	11.5	20.71

Protein Annotations

EMBL:ACUP02010746	EnsemblPlants:KRH05522	EnsemblPlantsGene:GLYMA_17G231600	EntrezGene:100788038	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	PANTHER:PTHR34281	ProteinID:KRH05522
ProteinID:KRH05522.1	UniParc:UPI000233E508	UniProt:I1MXE4	MapMan:15.5.27	MapMan:27.1.6.3.2	:

Description

hypothetical protein

Coordinates

chr17:-:38644593..38649509

Molecular Weight (calculated)

78058.2 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.731

Length

713 amino acids

Sequence
(BLAST)

001: MKRGNEEEKL GGPMFPRLHV NDAEKGGPRA PPRNKMALYE QFSIPSQKFN PRLLPRKPNS SSNIVPPPTQ GNGHERSYVY PVRFSSQTPT HRAESYISRQ
101: SDDGSRSNTS LVQLERRKKV DDDIHVYTCS GIDQSNDKTM ESVDGKKFTP FGARNFCYSV AVQNDGDKDP TQFSSCSLPV DLRKDVRNGN EANPHVSSSR
201: RKPKMSVKNN SSGEIIDSLM MQAKVIPNLE DQDYSVPNIS RLHQDDTCLQ KECVAGSQSN DVEHGDDLLN STRDIDNGNA LVPRGCFHSA ANQTRPLEAT
301: NDAEYHDTGT GGPIQKGNFD ERDNISKIST VTNLSSLIVS PDDVVGILGQ KHFWKARRKI ANQQSVFAVQ VFELHRLIKV QQLIAASPDV LLEDVAFMGK
401: FPLTESPPKN ISLEVVVEPQ QQNPKRKNDS EKLNHKTECS AENAVAKRTS FSSPKNGSHL ANHTPFSGTP HQANVASDNK TSPWCFNQTP GHQWLIPVMS
501: PSEGLVYKPY PGPGFKGTMH GGCGGPFGQA PLSATFMNPA YQFPASHPVV GVSPFVPPAS HTYFAPFGMP VMNQATSGSA VEQVNQFAAQ GSHGQNGHSS
601: VEGADFNTHH NQSSSNLPVQ KNGARLHVKK SQALKERGLQ GSTRSSPSEM AQGIRAGKIA DGSDAQSLSL HAVETRQQTQ AIKVVPHNRK SATESAARIF
701: QSIQEERKQH DLV

Best Arabidopsis Sequence Match ( AT2G25930.1 )
(BLAST)

001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP

Arabidopsis Description

ELF3Protein EARLY FLOWERING 3 [Source:UniProtKB/Swiss-Prot;Acc:O82804]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.