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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 6
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
YLoc:plasma membrane
 nucleus: 23303719
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os04t0471300-01
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17760.1 Os04t0471300-01 AT4G26455.1 21798944
AT2G17760.1 Os08t0497900-01 AT4G26455.1 21798944
AT2G17760.1 Os09t0481300-01 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022600_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 69.39 66.67
EER99278 Sorghum extracellular, plasma membrane, vacuole 70.61 66.16
TraesCS5B01G334700.1 Wheat endoplasmic reticulum, extracellular, vacuole 68.78 65.31
TraesCS5D01G340300.1 Wheat extracellular, plasma membrane, vacuole 68.78 64.81
TraesCS5A01G335500.1 Wheat extracellular, plasma membrane, vacuole 67.96 64.04
HORVU5Hr1G084490.1 Barley vacuole 67.14 59.39
PGSC0003DMT400010765 Potato cytosol 18.16 47.85
VIT_00s0510g00050.t01 Wine grape plasma membrane, vacuole 29.8 47.71
Solyc03g033360.1.1 Tomato plastid 35.51 44.73
GSMUA_AchrUn_... Banana plasma membrane, vacuole 39.8 43.43
GSMUA_Achr7P03880_001 Banana extracellular 38.37 42.73
Bra002086.1-P Field mustard extracellular, plasma membrane, vacuole 43.47 42.35
Os04t0228000-01 Rice extracellular, vacuole 45.31 41.89
GSMUA_AchrUn_... Banana vacuole 43.88 41.75
CDY24371 Canola extracellular, plasma membrane, vacuole 43.47 41.6
AT2G17760.1 Thale cress golgi, plasma membrane, vacuole 43.47 41.52
KRH28845 Soybean vacuole 42.86 41.34
CDY07819 Canola vacuole 42.86 41.1
CDY29199 Canola vacuole 42.86 41.1
Bra024490.1-P Field mustard vacuole 42.86 41.1
KRH76603 Soybean vacuole 42.24 40.75
Solyc02g083460.2.1 Tomato extracellular 44.08 40.07
Os06t0717900-02 Rice extracellular 44.49 39.56
KRH07991 Soybean nucleus 41.63 39.53
PGSC0003DMT400009406 Potato plasma membrane, vacuole 43.27 39.33
PGSC0003DMT400058018 Potato vacuole 41.43 37.11
CDY20815 Canola plasma membrane, plastid, vacuole 43.47 35.32
Bra036814.1-P Field mustard vacuole 34.49 34.99
Os02t0751100-01 Rice plasma membrane 36.94 34.81
AT3G51330.1 Thale cress extracellular, plasma membrane, vacuole 37.35 34.59
CDX73727 Canola vacuole 34.69 34.48
KRH69733 Soybean nucleus 42.24 34.39
CDX78000 Canola vacuole 34.69 33.73
CDY02252 Canola golgi, plasma membrane, vacuole 21.43 33.65
AT3G51360.9 Thale cress vacuole 34.08 33.53
CDX90651 Canola plasma membrane 36.33 33.33
Bra036815.1-P Field mustard vacuole 36.33 32.84
CDX77999 Canola vacuole 35.92 32.84
CDY29013 Canola plasma membrane 35.71 32.77
AT3G51350.1 Thale cress extracellular, plasma membrane, vacuole 34.9 32.39
CDX73728 Canola vacuole 35.51 32.34
AT3G51340.1 Thale cress plasma membrane 34.9 32.26
Bra013063.1-P Field mustard plasma membrane 18.98 32.07
Bra012857.1-P Field mustard plasma membrane 28.78 31.26
Os04t0337000-01 Rice mitochondrion 16.53 25.23
Os11t0184800-01 Rice vacuole 20.41 24.39
Os11t0184600-00 Rice extracellular 11.22 23.4
Os12t0177500-01 Rice plasma membrane, vacuole 19.39 22.57
Os11t0183900-01 Rice plasma membrane 19.18 22.49
Os04t0334951-01 Rice extracellular 18.57 21.02
Os02t0473200-01 Rice plasma membrane 21.02 20.85
Os04t0336600-00 Rice extracellular 18.98 19.29
Os04t0334700-01 Rice extracellular 18.98 19.29
Os06t0268700-01 Rice vacuole 19.18 17.47
Os02t0730700-02 Rice cytosol, peroxisome, vacuole 18.98 16.23
Os07t0592200-02 Rice plasma membrane 18.57 14.42
Protein Annotations
MapMan:19.4.3.1Gene3D:2.40.70.10InterPro:Aspartic_peptidase_A1InterPro:Aspartic_peptidase_ASProteinID:BAF25733.1ProteinID:BAT09212.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0004190GO:GO:0005488
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0009056GO:GO:0016787
GO:GO:0019538GO:GO:0030163InterPro:IPR021109InterPro:IPR033121EnsemblPlantsGene:Os09g0542100EnsemblPlants:Os09t0542100-01
InterPro:PEPTIDASE_A1PFAM:PF14541PFAM:PF14543PRINTS:PR00792ScanProsite:PS00141PFscan:PS51767
PANTHER:PTHR13683PANTHER:PTHR13683:SF407InterPro:Peptidase_aspartic_dom_sfUniProt:Q0IZY2SUPFAM:SSF50630SignalP:SignalP-TM
InterPro:TAXi_CInterPro:TAXi_NTMHMM:TMhelixUniParc:UPI0000DD9853SEG:seg:
Description
Peptidase A1 domain containing protein. (Os09t0542100-01)
Coordinates
chr9:-:21347264..21350949
Molecular Weight (calculated)
51973.7 Da
IEP (calculated)
7.421
GRAVY (calculated)
0.039
Length
490 amino acids
Sequence
(BLAST)
001: LFLLSAFALL CFVASYGWWW WWCGGCSGCA AAARRRGRGG GAEPGRPPPV LGGGAPVGGR RRAATRDRLN DFGFLHYAVV ALGTPNVTFL VALDTGSDLF
101: WVPCDCLKCA PFQSPNYGSL KFDVYSPAQS TTSRKVPCSS NLCDLQNACR SKSNSCPYSI QYLSDNTSSS GVLVEDVLYL TSDSAQSKIV TAPIMFGCGQ
201: VQTGSFLGSA APNGLLGLGM DSKSVPSLLA SKGLAANSFS MCFGDDGHGR INFGDTGSSD QKETPLNVYK QNPYYNITIT GITVGSKSIS TEFSAIVDSG
301: TSFTALSDPM YTQITSSFDA QIRSSRNMLD SSMPFEFCYS VSANGIVHPN VSLTAKGGSI FPVNDPIITI TDNAFNPVGY CLAIMKSEGV NLIGENFMSG
401: LKVVFDRERM VLGWKNFNCY NFDESSRLPV NPSPSAVPSK PGLGPSSYTP EAAKGALPNG TQVNVMPSAS SPLQPQSVSA TIVLLFLIVL
Best Arabidopsis Sequence Match ( AT4G35880.1 )
(BLAST)
001: MSCCFFKTTL FLIPILMLLS FGSCNGRIFT FEMHHRFSDE VKQWSDSTGR FAKFPPKGSF EYFNALVLRD WLIRGRRLSE SESESESSLT FSDGNSTSRI
101: SSLGFLHYTT VKLGTPGMRF MVALDTGSDL FWVPCDCGKC APTEGATYAS EFELSIYNPK VSTTNKKVTC NNSLCAQRNQ CLGTFSTCPY MVSYVSAQTS
201: TSGILMEDVM HLTTEDKNPE RVEAYVTFGC GQVQSGSFLD IAAPNGLFGL GMEKISVPSV LAREGLVADS FSMCFGHDGV GRISFGDKGS SDQEETPFNL
301: NPSHPNYNIT VTRVRVGTTL IDDEFTALFD TGTSFTYLVD PMYTTVSESF HSQAQDKRHS PDSRIPFEYC YDMSNDANAS LIPSLSLTMK GNSHFTINDP
401: IIVISTEGEL VYCLAIVKSS ELNIIGQNYM TGYRVVFDRE KLVLAWKKFD CYDIEETNTT VAGTNKTAAV APAMAAGIKT HNNSSELHKT NQTISKSNSS
501: PNQISKTVDV WSFFRFVFIL LPLV
Arabidopsis Description
AT4G35880 protein [Source:UniProtKB/TrEMBL;Acc:B3LF45]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.