Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, vacuole

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • mitochondrion 1
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid, vacuole
Any Predictor:nucleus, plasma membrane, plastid, vacuole
BaCelLo:nucleus
MultiLoc:vacuole
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17760.1 CDX89333 AT4G26455.1 21798944
AT2G17760.1 CDX94330 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24371 Canola extracellular, plasma membrane, vacuole 82.75 97.46
AT2G17760.1 Thale cress golgi, plasma membrane, vacuole 75.62 88.89
CDY29199 Canola vacuole 72.8 85.91
CDY07819 Canola vacuole 70.81 83.56
VIT_00s0510g00050.t01 Wine grape plasma membrane, vacuole 28.03 55.23
KRH28845 Soybean vacuole 45.77 54.33
KRH76603 Soybean vacuole 45.11 53.54
CDY02252 Canola golgi, plasma membrane, vacuole 27.53 53.21
PGSC0003DMT400009406 Potato plasma membrane, vacuole 44.78 50.09
PGSC0003DMT400010765 Potato cytosol 15.42 50.0
Solyc02g083460.2.1 Tomato extracellular 44.44 49.72
KRH07991 Soybean nucleus 42.45 49.61
GSMUA_Achr4P05070_001 Banana plasma membrane, vacuole 36.32 48.88
Solyc03g033360.1.1 Tomato plastid 30.02 46.53
CDY29013 Canola plasma membrane 40.96 46.25
CDX90651 Canola plasma membrane 40.96 46.25
PGSC0003DMT400058018 Potato vacuole 41.79 46.07
Zm00001d022600_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 38.64 45.69
TraesCS2D01G065800.1 Wheat vacuole 38.47 45.49
GSMUA_Achr2P03530_001 Banana plasma membrane 39.3 45.49
CDX69179 Canola plasma membrane 39.8 45.2
CDX75536 Canola endoplasmic reticulum, plasma membrane, vacuole 39.64 45.18
TraesCS2B01G079700.1 Wheat vacuole 38.47 45.14
KRH69733 Soybean nucleus 44.94 45.02
GSMUA_Achr1P07410_001 Banana cytosol 10.45 45.0
TraesCS5B01G334700.1 Wheat endoplasmic reticulum, extracellular, vacuole 38.47 44.96
CDX73727 Canola vacuole 36.65 44.83
GSMUA_AchrUn_... Banana plasma membrane, vacuole 33.33 44.77
GSMUA_Achr1P07390_001 Banana extracellular, vacuole 38.14 44.66
TraesCS2A01G067500.1 Wheat vacuole 37.98 44.64
TraesCS5D01G340300.1 Wheat extracellular, plasma membrane, vacuole 38.31 44.42
KXG25917 Sorghum vacuole 37.98 44.29
TraesCS5A01G335500.1 Wheat extracellular, plasma membrane, vacuole 38.14 44.23
EER99278 Sorghum extracellular, plasma membrane, vacuole 38.14 43.98
CDX78000 Canola vacuole 36.65 43.85
CDX77999 Canola vacuole 38.97 43.84
Os09t0542100-01 Rice plasma membrane 35.32 43.47
CDX73728 Canola vacuole 38.64 43.31
Zm00001d004132_P001 Maize extracellular 37.15 43.24
GSMUA_AchrUn_... Banana vacuole 36.65 42.91
GSMUA_Achr7P03880_001 Banana extracellular 31.18 42.73
GSMUA_Achr1P07400_001 Banana cytosol, plasma membrane, plastid 11.28 42.5
Os04t0228000-01 Rice extracellular, vacuole 37.31 42.45
HORVU5Hr1G084490.1 Barley vacuole 38.31 41.7
TraesCS7A01G537200.1 Wheat plasma membrane 36.98 41.68
HORVU7Hr1G118020.3 Barley extracellular, plasma membrane, vacuole 36.82 41.34
TraesCS7D01G524300.1 Wheat plastid 35.66 41.03
Zm00001d014804_P001 Maize extracellular 36.82 40.88
EER88970 Sorghum vacuole 36.65 40.85
Os06t0717900-02 Rice extracellular 36.32 39.75
EER89124 Sorghum extracellular, vacuole 37.15 38.96
Zm00001d036037_P001 Maize vacuole 36.82 38.54
CDY21633 Canola cytosol 22.55 33.33
CDX69862 Canola plasma membrane, vacuole 28.36 33.08
CDY21629 Canola plastid, vacuole 28.19 32.82
CDY71029 Canola cytosol, plastid, vacuole 7.13 25.9
CDY68869 Canola extracellular, vacuole 18.08 25.0
CDX92331 Canola extracellular, plasma membrane, vacuole 20.23 24.85
CDY26962 Canola vacuole 20.07 24.64
CDY22694 Canola endoplasmic reticulum, extracellular, vacuole 16.09 24.31
CDY55968 Canola plasma membrane 18.74 23.94
CDY12535 Canola vacuole 15.59 23.92
CDY51094 Canola extracellular, vacuole 18.41 23.82
CDY22695 Canola mitochondrion, plastid 11.77 23.75
CDY12353 Canola plasma membrane 18.57 23.73
CDX68982 Canola golgi, vacuole 16.92 23.72
CDY14973 Canola vacuole 16.09 23.66
CDX75359 Canola golgi, vacuole 16.75 23.54
CDY09172 Canola extracellular, golgi 15.75 23.51
CDY06305 Canola endoplasmic reticulum, plasma membrane, vacuole 19.07 23.23
CDY41786 Canola plasma membrane, vacuole 17.41 23.23
CDY10006 Canola extracellular, plasma membrane, vacuole 18.57 23.19
CDX88370 Canola plasma membrane, vacuole 17.58 23.04
CDY18730 Canola extracellular, plasma membrane, vacuole 15.26 22.94
CDY06183 Canola plasma membrane, vacuole 18.41 22.84
CDY41753 Canola golgi, plasma membrane, vacuole 18.24 22.82
CDX87518 Canola plasma membrane, vacuole 17.41 22.78
CDY10133 Canola vacuole 16.09 22.72
CDY28705 Canola vacuole 18.24 22.45
CDY33177 Canola extracellular, plasma membrane, vacuole 18.57 22.22
CDX75024 Canola vacuole 18.57 22.22
CDY63001 Canola endoplasmic reticulum, plasma membrane, vacuole 17.74 22.15
CDY51538 Canola vacuole 17.91 22.09
CDY32825 Canola endoplasmic reticulum, plasma membrane 18.24 22.04
CDY31159 Canola plasma membrane 18.24 22.04
CDY37650 Canola extracellular, golgi 17.58 21.95
CDY53740 Canola vacuole 14.43 21.48
CDY60079 Canola cytosol 18.41 20.59
CDY38557 Canola cytosol, plastid 9.12 20.22
CDY04326 Canola cytosol, endoplasmic reticulum, vacuole 18.41 19.72
CDX83107 Canola plasma membrane 18.57 17.81
CDX68564 Canola plasma membrane, vacuole 18.57 17.78
CDY30609 Canola plasma membrane 18.24 17.6
CDY57356 Canola plasma membrane 18.41 17.56
CDY22367 Canola plasma membrane 18.24 16.95
CDX71501 Canola plasma membrane 17.08 15.9
Protein Annotations
MapMan:19.4.3.1Gene3D:2.40.70.10GO:A0A078G2T2UniProt:A0A078G2T2InterPro:Aspartic_peptidase_A1InterPro:Aspartic_peptidase_AS
EnsemblPlants:CDY20815ProteinID:CDY20815ProteinID:CDY20815.1ncoils:CoilGO:GO:0003674GO:GO:0003824
GO:GO:0004190GO:GO:0005575GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00013076001InterPro:IPR021109
InterPro:IPR033121InterPro:PEPTIDASE_A1PFAM:PF14541PFAM:PF14543PRINTS:PR00792ScanProsite:PS00141
PFscan:PS51767PANTHER:PTHR13683PANTHER:PTHR13683:SF232InterPro:Peptidase_aspartic_dom_sfSUPFAM:SSF50630InterPro:TAXi_C
InterPro:TAXi_NTMHMM:TMhelixUniParc:UPI0004EAB51DSEG:seg::
Description
BnaC07g06640DBnaC07g06640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2T2]
Coordinates
chrLK032112:+:399496..402724
Molecular Weight (calculated)
66078.3 Da
IEP (calculated)
7.925
GRAVY (calculated)
-0.140
Length
603 amino acids
Sequence
(BLAST)
001: MTPGPTSTTS TLTIAISEVE KEKIDLKAQR NNTKREESFI ASSSTILPSC LISRFRIKIL ITSYRILGKF PAFSLRKFPR SRRRSSEGTT AMVVYSSCRI
101: MLLGLIIVVI SSWVLDKAQA FGEFGFEFHH RFSDRVVGAL PGDGLPSRGS TQYYRVMAHR DRVIRGRRLA TQDQSLVSFA DGNETVRVDA LGFLHYANVT
201: VGTPSDWFLV ALDTGSDLFW LPCDCTNCVR ELKRPGGSSV KLNIYSPNAS STSAKVPCNS SLCTRGDRCA SPNSNCPYQI RYLSNGTSST GVLVEDVLHL
301: VSNDKNSKAI PARVTLGCGQ VQTGVFHDGA APNGLFGLGL EDISVPSVLA KEGIATNSFS MCFGNDGAGR ISFGDRGSVD QRETPLNIRQ PHPTYNITVT
401: QISVGGNTGD LEFDAVFDSG TSFTYLTAEA YTLITESFNS LALDKRYQTD SELPFEYCYA LSPNKESFQY PAVNLTMKGG GSYPVYHPLV VIPMKDTDVY
501: CLGVMKIEDI SIIGQNFMTG YRVVFDREKL VLGWKESDCY TGETSARALP SNRSSSSARP PASSFEPEAT NIPSQRPSTS SSTYYSLSLT VSFFYFFSVL
601: AFL
Best Arabidopsis Sequence Match ( AT2G17760.1 )
(BLAST)
001: MVWYSSCRIL FLGLLILLAS SWVLDRCEGF GEFGFEFHHR FSDQVVGVLP GDGLPNRDSS KYYRVMAHRD RLIRGRRLAN EDQSLVTFSD GNETVRVDAL
101: GFLHYANVTV GTPSDWFMVA LDTGSDLFWL PCDCTNCVRE LKAPGGSSLD LNIYSPNASS TSTKVPCNST LCTRGDRCAS PESDCPYQIR YLSNGTSSTG
201: VLVEDVLHLV SNDKSSKAIP ARVTFGCGQV QTGVFHDGAA PNGLFGLGLE DISVPSVLAK EGIAANSFSM CFGNDGAGRI SFGDKGSVDQ RETPLNIRQP
301: HPTYNITVTK ISVGGNTGDL EFDAVFDSGT SFTYLTDAAY TLISESFNSL ALDKRYQTTD SELPFEYCYA LSPNKDSFQY PAVNLTMKGG SSYPVYHPLV
401: VIPMKDTDVY CLAIMKIEDI SIIGQNFMTG YRVVFDREKL ILGWKESDCY TGETSARTLP SNRSSSSARP PASSFDPEAT NIPSQRPNTS TTSAAYSLSI
501: SLSLFFFSIL AIL
Arabidopsis Description
APF1Aspartyl protease family protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYV9]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.