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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 7
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400022426
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17760.1 PGSC0003DMT400022426 AT4G26455.1 21798944
AT2G17760.1 PGSC0003DMT400056956 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g083460.2.1 Tomato extracellular 95.36 95.36
PGSC0003DMT400010765 Potato cytosol 27.27 79.03
PGSC0003DMT400058018 Potato vacuole 68.65 67.64
VIT_00s0510g00050.t01 Wine grape plasma membrane, vacuole 32.28 56.86
KRH76603 Soybean vacuole 50.28 53.35
Bra002086.1-P Field mustard extracellular, plasma membrane, vacuole 49.72 53.28
AT2G17760.1 Thale cress golgi, plasma membrane, vacuole 50.65 53.22
CDY24371 Canola extracellular, plasma membrane, vacuole 49.91 52.54
CDY29199 Canola vacuole 49.54 52.25
Bra024490.1-P Field mustard vacuole 49.54 52.25
KRH28845 Soybean vacuole 49.17 52.17
CDY07819 Canola vacuole 49.35 52.05
GSMUA_Achr4P05070_001 Banana plasma membrane, vacuole 41.56 50.0
KRH07991 Soybean nucleus 47.5 49.61
GSMUA_Achr1P07400_001 Banana cytosol, plasma membrane, plastid 13.73 46.25
GSMUA_Achr2P03530_001 Banana plasma membrane 44.53 46.07
PGSC0003DMT400009410 Potato plasma membrane, vacuole 43.78 45.91
GSMUA_Achr1P07390_001 Banana extracellular, vacuole 43.41 45.44
GSMUA_Achr1P07410_001 Banana cytosol 11.69 45.0
TraesCS2D01G065800.1 Wheat vacuole 42.49 44.9
KXG25917 Sorghum vacuole 43.04 44.87
CDY02252 Canola golgi, plasma membrane, vacuole 25.97 44.87
TraesCS2A01G067500.1 Wheat vacuole 42.67 44.83
CDY20815 Canola plasma membrane, plastid, vacuole 50.09 44.78
GSMUA_AchrUn_... Banana plasma membrane, vacuole 37.11 44.54
Zm00001d022600_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 42.12 44.51
TraesCS2B01G079700.1 Wheat vacuole 42.3 44.36
Zm00001d004132_P001 Maize extracellular 42.3 44.02
TraesCS5B01G334700.1 Wheat endoplasmic reticulum, extracellular, vacuole 41.74 43.6
EER99278 Sorghum extracellular, plasma membrane, vacuole 42.3 43.59
Bra036814.1-P Field mustard vacuole 38.96 43.48
Os04t0228000-01 Rice extracellular, vacuole 42.67 43.4
TraesCS5A01G335500.1 Wheat extracellular, plasma membrane, vacuole 41.74 43.27
Os09t0542100-01 Rice plasma membrane 39.33 43.27
AT3G51330.1 Thale cress extracellular, plasma membrane, vacuole 42.3 43.1
GSMUA_Achr7P03880_001 Banana extracellular 35.06 42.95
TraesCS5D01G340300.1 Wheat extracellular, plasma membrane, vacuole 41.37 42.88
KRH69733 Soybean nucleus 47.87 42.86
Bra013063.1-P Field mustard plasma membrane 23.01 42.76
CDX73727 Canola vacuole 38.96 42.6
AT3G51360.9 Thale cress vacuole 38.78 41.97
CDX78000 Canola vacuole 39.15 41.87
CDX90651 Canola plasma membrane 41.0 41.39
EER88970 Sorghum vacuole 41.37 41.22
CDY29013 Canola plasma membrane 40.82 41.2
GSMUA_AchrUn_... Banana vacuole 39.15 40.97
TraesCS7D01G524300.1 Wheat plastid 39.33 40.46
Bra012857.1-P Field mustard plasma membrane 33.77 40.35
Os06t0717900-02 Rice extracellular 41.19 40.29
HORVU5Hr1G084490.1 Barley vacuole 41.37 40.25
HORVU7Hr1G118020.3 Barley extracellular, plasma membrane, vacuole 39.89 40.04
Zm00001d014804_P001 Maize extracellular 40.26 39.96
TraesCS7A01G537200.1 Wheat plasma membrane 39.52 39.81
CDX73728 Canola vacuole 39.7 39.78
AT3G51350.1 Thale cress extracellular, plasma membrane, vacuole 38.78 39.58
CDX77999 Canola vacuole 39.15 39.37
Bra036815.1-P Field mustard vacuole 39.33 39.11
AT3G51340.1 Thale cress plasma membrane 37.48 38.11
Zm00001d036037_P001 Maize vacuole 40.26 37.67
EER89124 Sorghum extracellular, vacuole 39.7 37.22
PGSC0003DMT400022458 Potato endoplasmic reticulum, extracellular, vacuole 34.51 34.64
PGSC0003DMT400056847 Potato vacuole 25.42 33.58
PGSC0003DMT400027299 Potato endoplasmic reticulum, golgi, vacuole 20.41 25.29
PGSC0003DMT400037976 Potato vacuole 18.92 24.4
PGSC0003DMT400080179 Potato extracellular 19.48 24.03
PGSC0003DMT400060025 Potato endoplasmic reticulum, extracellular, vacuole 21.15 23.9
PGSC0003DMT400071953 Potato vacuole 17.63 23.69
PGSC0003DMT400001138 Potato plasma membrane 21.71 23.49
PGSC0003DMT400013994 Potato vacuole 19.48 22.06
PGSC0003DMT400033805 Potato extracellular, plasma membrane, vacuole 20.22 21.8
PGSC0003DMT400030753 Potato extracellular 17.81 21.77
PGSC0003DMT400055639 Potato endoplasmic reticulum, plasma membrane, vacuole 19.3 21.67
PGSC0003DMT400022163 Potato cytosol, extracellular, plasma membrane 20.04 21.6
PGSC0003DMT400034018 Potato golgi, plasma membrane, vacuole 19.11 21.5
PGSC0003DMT400010418 Potato cytosol, nucleus, vacuole 18.37 17.74
PGSC0003DMT400028148 Potato cytosol 15.4 16.44
PGSC0003DMT400073638 Potato plasma membrane 19.67 16.18
Protein Annotations
MapMan:19.4.3.1Gene3D:2.40.70.10InterPro:Aspartic_peptidase_A1InterPro:Aspartic_peptidase_ASGO:GO:0003674GO:GO:0003824
GO:GO:0004190GO:GO:0005575GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538InterPro:IPR021109InterPro:IPR033121
UniProt:M0ZW73InterPro:PEPTIDASE_A1PFAM:PF14541PFAM:PF14543EnsemblPlantsGene:PGSC0003DMG400003655PGSC:PGSC0003DMG400003655
EnsemblPlants:PGSC0003DMT400009406PRINTS:PR00792ScanProsite:PS00141PFscan:PS51767PANTHER:PTHR13683PANTHER:PTHR13683:SF232
InterPro:Pepsin-like_plantInterPro:Peptidase_aspartic_dom_sfSUPFAM:SSF50630SignalP:SignalP-noTMInterPro:TAXi_CInterPro:TAXi_N
TMHMM:TMhelixUniParc:UPI000295180FSEG:seg:::
Description
Aspartic proteinase nepenthesin-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003655]
Coordinates
chr2:+:39058583..39062821
Molecular Weight (calculated)
58130.7 Da
IEP (calculated)
5.423
GRAVY (calculated)
-0.106
Length
539 amino acids
Sequence
(BLAST)
001: MPDSCKIRNF FVAPILFLAI LGYQLQRTDG FGTFGFDIHH RYSDPVKGIL DLHGLPEKGS VEYYSAWTQR DRFVKGRRLA DTTNPTVPLT FSGGNETLQL
101: SSLGFLHYAN VTVGSPGLSF LVALDTGSDL FWLPCDCSNC VRALQTRNGG RRNLNIYSPN TSSTSEVVPC NGTLCGQNRR CLASQNACAY GVAYLSNNTS
201: SSGVLVEDIL HLETNNAQQK SIEAPIALGC GIRQTGAFLT GAAPNGLFGL GIENISVPSM LASKGLAANS FSTCFGPDGI GRIVFGDKGS PGQGETPLNL
301: DQPHPTYNIS LTGITVGSKI TDLDFTAIFD SGTSFTYLND PVYKVITENF DSEAKQPRIQ PDGEIPFEYC YGISANQTRF EVPEVNLTMK GGNQLYLFDP
401: IIMLSLPDGS GAYCLAVVKS GDVNIIGQNF MTGYRVIFDR EKMVLGWKAS DCYDSGESND KSTTLPVNKH NSTEAPSPAS VVPEATKGNA SANEPATSLP
501: SVPSSRPAGN HAPHLNSFYC QFMMAIFSFF SYFLIIISS
Best Arabidopsis Sequence Match ( AT2G17760.1 )
(BLAST)
001: MVWYSSCRIL FLGLLILLAS SWVLDRCEGF GEFGFEFHHR FSDQVVGVLP GDGLPNRDSS KYYRVMAHRD RLIRGRRLAN EDQSLVTFSD GNETVRVDAL
101: GFLHYANVTV GTPSDWFMVA LDTGSDLFWL PCDCTNCVRE LKAPGGSSLD LNIYSPNASS TSTKVPCNST LCTRGDRCAS PESDCPYQIR YLSNGTSSTG
201: VLVEDVLHLV SNDKSSKAIP ARVTFGCGQV QTGVFHDGAA PNGLFGLGLE DISVPSVLAK EGIAANSFSM CFGNDGAGRI SFGDKGSVDQ RETPLNIRQP
301: HPTYNITVTK ISVGGNTGDL EFDAVFDSGT SFTYLTDAAY TLISESFNSL ALDKRYQTTD SELPFEYCYA LSPNKDSFQY PAVNLTMKGG SSYPVYHPLV
401: VIPMKDTDVY CLAIMKIEDI SIIGQNFMTG YRVVFDREKL ILGWKESDCY TGETSARTLP SNRSSSSARP PASSFDPEAT NIPSQRPNTS TTSAAYSLSI
501: SLSLFFFSIL AIL
Arabidopsis Description
APF1Aspartyl protease family protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYV9]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.