Factsheet for TraesCS2B01G037400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 4
extracellular 5
endoplasmic reticulum 4
vacuole 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G035900.1	Wheat	extracellular, golgi	95.83	95.83
TraesCS2B01G037200.1	Wheat	plastid	58.85	95.18
TraesCS2D01G026900.1	Wheat	extracellular, golgi	93.24	93.61
TraesCSU01G233300.1	Wheat	extracellular, golgi	55.07	84.71
TraesCS2B01G035200.1	Wheat	cytosol	77.93	80.0
HORVU2Hr1G004030.1	Barley	cytosol	23.06	79.45
TraesCS2B01G036100.1	Wheat	cytosol	29.03	72.28
TraesCS2B01G036000.1	Wheat	cytosol	40.36	72.24
TraesCS2B01G037800.1	Wheat	extracellular	41.95	71.77
Os04t0184100-01	Rice	extracellular	71.17	71.03
Zm00001d004288_P001	Maize	extracellular	26.64	69.43
Os04t0183500-01	Rice	extracellular, plasma membrane	69.18	69.18
Os04t0182875-00	Rice	extracellular	25.65	67.54
TraesCS2B01G037100.1	Wheat	golgi	67.59	66.93
TraesCS2B01G035800.1	Wheat	vacuole	63.42	65.5
Os04t0184500-00	Rice	cytosol, plastid	23.26	65.36
TraesCS2B01G037500.1	Wheat	cytosol, plastid	46.72	64.38
CDY28936	Canola	plastid	49.7	63.45
PGSC0003DMT400004114	Potato	plastid	17.69	60.54
Bra011569.1-P	Field mustard	cytosol	43.14	59.62
CDY51679	Canola	endoplasmic reticulum, vacuole	54.47	58.42
VIT_03s0038g02030.t01	Wine grape	mitochondrion	53.88	58.15
Bra022128.1-P	Field mustard	endoplasmic reticulum, vacuole	57.06	57.75
VIT_03s0038g02040.t01	Wine grape	extracellular	58.65	57.39
KRH42701	Soybean	cytosol	54.47	55.92
TraesCS1B01G448000.1	Wheat	extracellular, vacuole	56.86	55.32
CDX69095	Canola	cytosol	42.94	55.24
VIT_03s0038g02010.t01	Wine grape	extracellular, vacuole	51.89	55.06
PGSC0003DMT400005106	Potato	extracellular	45.92	54.48
Solyc01g111220.2.1	Tomato	extracellular	55.27	54.3
Solyc11g071550.1.1	Tomato	extracellular, nucleus	53.88	53.56
PGSC0003DMT400048145	Potato	extracellular	53.48	53.27
AT4G34880.2	Thale cress	vacuole	53.48	52.54
KRH58810	Soybean	nucleus	53.88	52.32
VIT_03s0038g01970.t01	Wine grape	cytosol	21.47	52.17
KRH42703	Soybean	cytosol, extracellular	9.15	51.11
PGSC0003DMT400004112	Potato	extracellular	55.27	51.1
KRH42704	Soybean	cytosol	20.87	50.0
CDX75470	Canola	plastid	30.02	49.67
CDX75471	Canola	cytosol	18.49	46.97
VIT_03s0038g02020.t01	Wine grape	mitochondrion	21.27	41.63
GSMUA_Achr2P11220_001	Banana	endoplasmic reticulum	58.45	41.41
Os01t0115200-00	Rice	mitochondrion, plastid	12.33	39.74
VIT_03s0038g01990.t01	Wine grape	nucleus, peroxisome, plastid	45.92	38.69
VIT_03s0038g02000.t01	Wine grape	plasma membrane	56.46	27.68

Protein Annotations

EnsemblPlants:TraesCS2B01G037400.1	EnsemblPlantsGene:TraesCS2B01G037400	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase_dom	InterPro:IPR036928
KEGG:00970+6.3.5.7	PANTHER:PTHR42678	PANTHER:PTHR42678:SF3	PFAM:PF01425	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF75304	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:17485487..17492034

Molecular Weight (calculated)

54467.8 Da

IEP (calculated)

9.731

GRAVY (calculated)

-0.030

Length

503 amino acids

Sequence
(BLAST)

001: MAWLRVQAVA IVLALLTAAG VTHSFEFHEA TVDAIQLGFR NGSLTSATLV RFYLDQIRRL NPLLHAVIEV NPDALRQAAR TDAERRRGMA TGALHGVPVL
101: LKDNIATRDV LNTTAGSLAL LGSVVKRDAG VAARLRRAGA VVLGKASLSE WANFRNVHNG WSARGGQTRN PYVLSSDPCG SSSGSGVAAA ANMAAVTLGT
201: ETDGSILCPS SFNSVVGIKP TVGLTSRAGV VPITPRQDTV GPMCRTVSDA VHVLDAIVGY DKLDAVATRA ASKYIPHGGY LQFLKKDGLR GKRIGVPNEL
301: FLFQGFGEKQ MRVYKQHLAT MRKQGAMVIE NLDIAIDSQD IVSNEWTAML TEFKLSINEY LADLSYSPVH SLADIIAFNK AHPIEERLKD FGQQNLILAQ
401: NTNGIGRLER ARIRWLKELS ANGLEKLMKE HQLDAIVAPE HYASNHLAIG GQPGIIVPAG YNEKGVPFGI CFGGLQGYEP RLIEMAYAFE QATKVRRPPM
501: FKP

Best Arabidopsis Sequence Match ( AT4G34880.1 )
(BLAST)

001: MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL
101: KNTTKLPILH GVPVLLKDSI STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA PSQNSVVGIK PSVGLTSRAG
201: VVPISLRQDS IGPICRTVSD AVHLLDAIVG YDPLDEATKT ASEFIPEGGY KQFLTTSGLK GKRLGIVMKH SSLLDHHIKT LRREGAIVIN NLTIPNIEVI
301: VGGTDSGEEI ALLAEFKMSL NAYLKELVKS PVRSLADVIA YNEEFAEQEK VKEWGQEVFL TAEATSGMGE KEKTALQKMK ELSRNGIEKL IEENKLDAIV
401: TLGSDLSSVL AIGGYPGINV PAGYDSGGVP YGISFGGLRF SEPKLIEIAF AFEQATLIRK PPKFIA

Arabidopsis Description

Amidase family protein [Source:TAIR;Acc:AT4G34880]
SUBAcon: [vacuole,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.