Factsheet for VIT_03s0038g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004114	Potato	plastid	31.88	44.9
TraesCS2B01G036000.1	Wheat	cytosol	49.76	36.65
TraesCS2B01G037200.1	Wheat	plastid	51.69	34.41
Zm00001d004287_P001	Maize	cytosol	49.28	32.48
HORVU2Hr1G004030.1	Barley	cytosol	22.71	32.19
TraesCS2D01G062200.1	Wheat	cytosol	46.38	30.77
TraesCS2B01G037500.1	Wheat	cytosol, plastid	51.69	29.32
Bra011569.1-P	Field mustard	cytosol	51.21	29.12
HORVU2Hr1G003980.8	Barley	cytosol	53.14	28.57
CDY28936	Canola	plastid	52.66	27.66
HORVU1Hr1G091420.1	Barley	cytosol, plastid	54.11	27.32
VIT_03s0038g02030.t01	Wine grape	mitochondrion	58.94	26.18
VIT_03s0038g02010.t01	Wine grape	extracellular, vacuole	59.9	26.16
TraesCSU01G211000.1	Wheat	cytosol	33.82	25.93
VIT_03s0038g01990.t01	Wine grape	nucleus, peroxisome, plastid	71.01	24.62
VIT_03s0038g02040.t01	Wine grape	extracellular	60.39	24.32
CDY51679	Canola	endoplasmic reticulum, vacuole	53.14	23.45
TraesCSU01G008400.1	Wheat	extracellular, golgi	55.56	22.64
TraesCS2B01G035800.1	Wheat	vacuole	53.14	22.59
TraesCSU01G233300.1	Wheat	extracellular, golgi	35.27	22.32
TraesCS1A01G417900.1	Wheat	endoplasmic reticulum, golgi	53.14	22.27
Bra022128.1-P	Field mustard	endoplasmic reticulum, vacuole	52.66	21.93
TraesCS1B01G448000.1	Wheat	extracellular, vacuole	54.59	21.86
TraesCS1D01G425500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	54.59	21.86
TraesCS2D01G026900.1	Wheat	extracellular, golgi	52.17	21.56
AT4G34880.2	Thale cress	vacuole	53.14	21.48
TraesCS2B01G037400.1	Wheat	nucleus	52.17	21.47
TraesCS2B01G035900.1	Wheat	extracellular, golgi	52.17	21.47
TraesCS2A01G025000.1	Wheat	golgi, plasma membrane, vacuole	52.66	21.41
TraesCS2B01G037100.1	Wheat	golgi	52.17	21.26
TraesCS2D01G027000.1	Wheat	golgi, plasma membrane, vacuole	52.17	21.22
TraesCS2D01G027200.1	Wheat	cytosol	53.14	20.79
CDX69095	Canola	cytosol	39.13	20.72
KXG36216	Sorghum	cytosol	49.28	20.65
TraesCS2B01G035200.1	Wheat	cytosol	48.79	20.61
TraesCS3D01G364700.2	Wheat	extracellular, vacuole	50.24	20.59
TraesCS2A01G064000.1	Wheat	extracellular, vacuole	50.24	20.51
HORVU5Hr1G087780.4	Barley	extracellular, golgi	50.24	20.51
EES11861	Sorghum	extracellular, golgi, plasma membrane	50.72	20.47
TraesCS2A01G025200.1	Wheat	extracellular	50.24	20.35
TraesCS2D01G026300.1	Wheat	cytosol	49.28	20.24
VIT_03s0038g02020.t01	Wine grape	mitochondrion	25.12	20.23
HORVU2Hr1G003990.5	Barley	cytosol	50.72	20.0
KXG38675	Sorghum	endoplasmic reticulum, vacuole	52.17	19.89
EER99375	Sorghum	extracellular	48.79	19.8
EER97209	Sorghum	extracellular	48.79	19.8
EES10484	Sorghum	golgi, vacuole	46.86	19.64
CDX75470	Canola	plastid	28.02	19.08
TraesCS2B01G037800.1	Wheat	extracellular	27.05	19.05
TraesCS2B01G036100.1	Wheat	cytosol	17.87	18.32
GSMUA_Achr2P11220_001	Banana	endoplasmic reticulum	58.94	17.18
CDX75471	Canola	cytosol	16.43	17.17
HORVU2Hr1G003810.1	Barley	extracellular, mitochondrion	15.94	12.84
VIT_03s0038g02000.t01	Wine grape	plasma membrane	60.39	12.18
HORVU2Hr1G004020.1	Barley	cytosol, mitochondrion	1.45	5.0
Zm00001d004288_P001	Maize	extracellular	4.35	4.66
HORVU1Hr1G091390.1	Barley	cytosol, extracellular	1.45	1.84
EES11858	Sorghum	extracellular	0.0	0.0

Protein Annotations

ArrayExpress:VIT_03s0038g01970	EMBL:FN596508	EnsemblPlants:VIT_03s0038g01970.t01	EnsemblPlantsGene:VIT_03s0038g01970	Gene3D:3.90.1300.10	InterPro:AS_sf
InterPro:Amidase_dom	InterPro:IPR036928	KEGG:00970+6.3.5.7	PANTHER:PTHR42678	PANTHER:PTHR42678:SF9	PFAM:PF01425
ProteinID:CBI37911	ProteinID:CBI37911.3	SUPFAM:SSF75304	UniParc:UPI0001BE4BDD	UniProt:D7U592	MapMan:35.1

Description

No Description!

Coordinates

chr3:+:1367294..1369340

Molecular Weight (calculated)

22762.2 Da

IEP (calculated)

5.734

GRAVY (calculated)

-0.131

Length

207 amino acids

Sequence
(BLAST)

001: MVAVSLGTET NGSIICPADH NSVIGFKPTV GLTSRAGVIP ISPRQDSVGT VSDAVYVLDA IVGFDPRDSQ AIEEASKFIP NGGYKQFFNK DGLTGKRLGV
101: VRNPFSYFYN ESTAILAFEA HLNTLRQRGA ILVDNLEKEN IDIIMDPNEC GESTALLAEL KLNINGYLRE LTSSPVRSLA DIIAFNLNSS DLRRLMNMDR
201: KSLWHQR

Best Arabidopsis Sequence Match ( AT4G34880.1 )
(BLAST)

001: MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL
101: KNTTKLPILH GVPVLLKDSI STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA PSQNSVVGIK PSVGLTSRAG
201: VVPISLRQDS IGPICRTVSD AVHLLDAIVG YDPLDEATKT ASEFIPEGGY KQFLTTSGLK GKRLGIVMKH SSLLDHHIKT LRREGAIVIN NLTIPNIEVI
301: VGGTDSGEEI ALLAEFKMSL NAYLKELVKS PVRSLADVIA YNEEFAEQEK VKEWGQEVFL TAEATSGMGE KEKTALQKMK ELSRNGIEKL IEENKLDAIV
401: TLGSDLSSVL AIGGYPGINV PAGYDSGGVP YGISFGGLRF SEPKLIEIAF AFEQATLIRK PPKFIA

Arabidopsis Description

Amidase family protein [Source:TAIR;Acc:AT4G34880]
SUBAcon: [vacuole,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.