Factsheet for VIT_03s0038g02000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 7
extracellular 6
endoplasmic reticulum 5
vacuole 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02010.t01	Wine grape	extracellular, vacuole	42.3	91.56
VIT_03s0038g02030.t01	Wine grape	mitochondrion	40.35	88.84
VIT_03s0038g02040.t01	Wine grape	extracellular	38.4	76.65
CDY28936	Canola	plastid	28.17	73.35
VIT_03s0038g02020.t01	Wine grape	mitochondrion	17.93	71.6
CDY51679	Canola	endoplasmic reticulum, vacuole	30.8	67.38
Bra011569.1-P	Field mustard	cytosol	23.88	67.31
Bra022128.1-P	Field mustard	endoplasmic reticulum, vacuole	32.36	66.8
CDX69095	Canola	cytosol	24.37	63.94
AT4G34880.2	Thale cress	vacuole	31.87	63.87
VIT_03s0038g01970.t01	Wine grape	cytosol	12.18	60.39
CDX75471	Canola	cytosol	11.31	58.59
HORVU2Hr1G004020.1	Barley	cytosol, mitochondrion	3.41	58.33
TraesCS2A01G025200.1	Wheat	extracellular	28.85	57.93
TraesCSU01G233300.1	Wheat	extracellular, golgi	18.32	57.49
TraesCS2B01G037800.1	Wheat	extracellular	16.47	57.48
TraesCS2B01G035200.1	Wheat	cytosol	27.39	57.35
Zm00001d004287_P001	Maize	cytosol	17.54	57.32
TraesCS3D01G364700.2	Wheat	extracellular, vacuole	28.17	57.23
HORVU5Hr1G087780.4	Barley	extracellular, golgi	28.17	57.0
EES11861	Sorghum	extracellular, golgi, plasma membrane	28.46	56.92
KXG36216	Sorghum	cytosol	27.39	56.88
TraesCS2A01G064000.1	Wheat	extracellular, vacuole	28.07	56.8
TraesCSU01G008400.1	Wheat	extracellular, golgi	28.07	56.69
TraesCS2B01G037400.1	Wheat	nucleus	27.68	56.46
EER97209	Sorghum	extracellular	27.97	56.27
TraesCS2B01G037200.1	Wheat	plastid	17.06	56.27
TraesCS2D01G026300.1	Wheat	cytosol	27.58	56.15
TraesCS1B01G448000.1	Wheat	extracellular, vacuole	28.27	56.09
TraesCS2B01G035900.1	Wheat	extracellular, golgi	27.49	56.06
TraesCS1D01G425500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	28.17	55.9
TraesCS2D01G026900.1	Wheat	extracellular, golgi	27.29	55.89
TraesCS2D01G027200.1	Wheat	cytosol	28.66	55.58
EER99375	Sorghum	extracellular	27.49	55.29
CDX75470	Canola	plastid	16.28	54.93
TraesCS2B01G037100.1	Wheat	golgi	27.19	54.92
TraesCS2D01G027000.1	Wheat	golgi, plasma membrane, vacuole	27.19	54.81
TraesCS2A01G025000.1	Wheat	golgi, plasma membrane, vacuole	27.0	54.42
TraesCS2B01G037500.1	Wheat	cytosol, plastid	19.1	53.7
TraesCS1A01G417900.1	Wheat	endoplasmic reticulum, golgi	25.83	53.64
HORVU2Hr1G003810.1	Barley	extracellular, mitochondrion	13.35	53.31
HORVU1Hr1G091420.1	Barley	cytosol, plastid	21.25	53.17
TraesCS2D01G062200.1	Wheat	cytosol	16.08	52.88
KXG38675	Sorghum	endoplasmic reticulum, vacuole	27.78	52.49
TraesCS2B01G035800.1	Wheat	vacuole	24.85	52.36
TraesCS2B01G036000.1	Wheat	cytosol	14.13	51.6
Zm00001d004288_P001	Maize	extracellular	9.65	51.3
EES10484	Sorghum	golgi, vacuole	24.66	51.21
TraesCSU01G211000.1	Wheat	cytosol	13.35	50.74
HORVU2Hr1G003980.8	Barley	cytosol	19.01	50.65
TraesCS2B01G036100.1	Wheat	cytosol	9.65	49.01
VIT_03s0038g01990.t01	Wine grape	nucleus, peroxisome, plastid	26.22	45.06
GSMUA_Achr2P11220_001	Banana	endoplasmic reticulum	29.73	42.96
EES11858	Sorghum	extracellular	3.02	38.75
HORVU2Hr1G003990.5	Barley	cytosol	19.49	38.1
HORVU1Hr1G091390.1	Barley	cytosol, extracellular	5.95	37.42
HORVU2Hr1G004030.1	Barley	cytosol	4.97	34.93

Protein Annotations

KEGG:00970+6.3.5.7	EntrezGene:100246978	wikigene:100246978	EntrezGene:100252118	wikigene:100252118	EntrezGene:100260628
wikigene:100260628	EntrezGene:100265841	wikigene:100265841	Gene3D:3.90.1300.10	MapMan:35.1	EMBL:AM450466
InterPro:AS_sf	InterPro:Amidase_dom	ProteinID:CAN80904	ProteinID:CAN80904.1	ProteinID:CAN80905	ProteinID:CAN80905.1
ProteinID:CCB60640	ProteinID:CCB60640.1	UniProt:F6I124	EMBL:FN596508	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036928
EntrezGene:LOC100246978	wikigene:LOC100246978	EntrezGene:LOC100252118	wikigene:LOC100252118	EntrezGene:LOC100260628	wikigene:LOC100260628
EntrezGene:LOC100265841	wikigene:LOC100265841	PFAM:PF01425	PANTHER:PTHR42678	PANTHER:PTHR42678:SF10	SUPFAM:SSF75304
SignalP:SignalP-noTM	TIGR:TC52827	TMHMM:TMhelix	UniParc:UPI000210AA83	ArrayExpress:VIT_03s0038g02000	EnsemblPlantsGene:VIT_03s0038g02000
EnsemblPlants:VIT_03s0038g02000.t01	unigene:Vvi.2602	RefSeq:XP_002276506	RefSeq:XP_002276506.1	RefSeq:XP_002277377	RefSeq:XP_002277377.2
RefSeq:XP_002277392	RefSeq:XP_002277392.2	RefSeq:XP_003631544	RefSeq:XP_003631544.1	RefSeq:XP_003631572	RefSeq:XP_003631572.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:1383516..1393182

Molecular Weight (calculated)

110477.0 Da

IEP (calculated)

7.755

GRAVY (calculated)

0.000

Length

1026 amino acids

Sequence
(BLAST)

0001: MDTMVMAMAF KMLSLLLLCG FFFSNSFVIE EANIQDIQWA FSQNKLTSRQ LVDFYLHQIE ALNPELRSVI EVNPDAREQA DKADAEIKSK KELGELHGIP
0101: VLLKDSINTK DKLNTTAGSY ALLGAEVSGD AAVVERLRKA GAVILGKASM SEWYQFRSLK TRNGWCPRSG QGVNPYVASG EPCGSSSGSA VSVAANMVAV
0201: SLGTETDGSI ICPADVNSVV GFKPTVGLTS RTGVIPISPR QDSVGPICRS VLDAVYVLDA IVGFDPRDGE ATKEASKFIP VGGYKQFLNK DGIAGKRLGV
0301: VRNPFSGFYN RSTAISAFEA HLTVLRQRGA ILVDNLEIEN VDIILNPYES GESTALLAEF KLNINEYLKE LTHSPVRSLA GIIAFNLNNS DLEKTDENGQ
0401: EVFIAAEMTN GIGKQERMAM EMMANLSRDG FEKLMMENEL DATVTLGSGM ATVLAIGGYP GVSVPAGYDG DGMPFGICFG GLKGMEPKLI EVAYGFEQAT
0501: KIRRPPASPK NLLFNTIMSI HSHVSTLFLL PLVLLQSGSI AITGHAFSIE EATVHDFHMA FEQNKLTSRQ LVEFYLGKIH KLNPILRGVI EVNPDALLQA
0601: DKADRERKAK LPGSLLGLHG IPILLKDNIA TKDKMNTTAG SFALLKSVVP RDAGVVRKLR KAGAIILGKA SLSEWAYFRA TVIPSGWCAR TGQGKNPYVL
0701: SATPCGSSSG SAISVAANLA AVSLGTETDG SILCPSHVNS VVGIKPTLGL TSRAGVVPIS PRQDTVGPIC RTVSDAVEVL DVIVGFDYRD EATRTSSKYI
0801: PQGGYKQFLN ANGLKGKRLG IVRNPFYMFE NGSVLPQVFE HHFHTLRQGG AILVDHLEIA NIDVIYGSSG EGAALEAEFK ISLNAYLKEL VASPVRTLAD
0901: VIAFNNKFSH LEKIKEYGQD TFLQAEATNG INKKTLLKLA RLSRNGFEKL MKEHKLDALV TPGSNVSPVL AIGGFPGISV PAGYDSKGVP FGICFGGLKG
1001: SEPKLIEIAY SFEQATKIRK PPSFKP

Best Arabidopsis Sequence Match ( AT4G34880.2 )
(BLAST)

001: MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL
101: KNTTKLPILH GVPVLLKDSI STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA RGLQGKNPYV LSANPSGSSS
201: GSAISVTANL VAVSLGTETD GSILSPASQN SVVGIKPSVG LTSRAGVVPI SLRQDSIGPI CRTVSDAVHL LDAIVGYDPL DEATKTASEF IPEGGYKQFL
301: TTSGLKGKRL GIVMKHSSLL DHHIKTLRRE GAIVINNLTI PNIEVIVGGT DSGEEIALLA EFKMSLNAYL KELVKSPVRS LADVIAYNEE FAEQEKVKEW
401: GQEVFLTAEA TSGMGEKEKT ALQKMKELSR NGIEKLIEEN KLDAIVTLGS DLSSVLAIGG YPGINVPAGY DSGGVPYGIS FGGLRFSEPK LIEIAFAFEQ
501: ATLIRKPPKF IA

Arabidopsis Description

Amidase family protein [Source:TAIR;Acc:AT4G34880]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.