Factsheet for VIT_03s0038g01990.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, peroxisome

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g01970.t01	Wine grape	cytosol	24.62	71.01
PGSC0003DMT400004114	Potato	plastid	17.42	70.75
CDY28936	Canola	plastid	40.2	60.91
VIT_03s0038g02010.t01	Wine grape	extracellular, vacuole	44.22	55.7
Zm00001d004287_P001	Maize	cytosol	28.64	54.46
TraesCS2B01G037200.1	Wheat	plastid	28.14	54.02
VIT_03s0038g02030.t01	Wine grape	mitochondrion	41.71	53.43
VIT_03s0038g02040.t01	Wine grape	extracellular	45.56	52.92
CDY51679	Canola	endoplasmic reticulum, vacuole	40.87	52.03
TraesCS2B01G037500.1	Wheat	cytosol, plastid	31.66	51.78
CDX75471	Canola	cytosol	17.09	51.52
HORVU1Hr1G091420.1	Barley	cytosol, plastid	35.34	51.46
CDX69095	Canola	cytosol	33.17	50.64
Bra022128.1-P	Field mustard	endoplasmic reticulum, vacuole	42.04	50.5
HORVU2Hr1G004020.1	Barley	cytosol, mitochondrion	5.03	50.0
TraesCS2D01G062200.1	Wheat	cytosol	25.8	49.36
TraesCS2B01G036000.1	Wheat	cytosol	23.12	49.11
VIT_03s0038g02020.t01	Wine grape	mitochondrion	21.11	49.03
TraesCSU01G211000.1	Wheat	cytosol	22.11	48.89
Bra011569.1-P	Field mustard	cytosol	29.65	48.63
AT4G34880.2	Thale cress	vacuole	41.21	48.05
TraesCS2B01G036100.1	Wheat	cytosol	15.91	47.03
TraesCS2B01G037400.1	Wheat	nucleus	38.69	45.92
EES11861	Sorghum	extracellular, golgi, plasma membrane	39.36	45.81
TraesCS1B01G448000.1	Wheat	extracellular, vacuole	39.53	45.65
KXG36216	Sorghum	cytosol	37.69	45.55
TraesCSU01G008400.1	Wheat	extracellular, golgi	38.53	45.28
HORVU2Hr1G003980.8	Barley	cytosol	29.15	45.19
TraesCS1D01G425500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	39.03	45.07
TraesCS2B01G035900.1	Wheat	extracellular, golgi	37.86	44.93
TraesCS2D01G026900.1	Wheat	extracellular, golgi	37.69	44.91
TraesCS2B01G035200.1	Wheat	cytosol	36.68	44.69
TraesCS2A01G025200.1	Wheat	extracellular	37.86	44.23
TraesCS2B01G037100.1	Wheat	golgi	37.52	44.09
TraesCS2A01G064000.1	Wheat	extracellular, vacuole	37.35	43.98
EER99375	Sorghum	extracellular	37.52	43.92
EER97209	Sorghum	extracellular	37.52	43.92
TraesCS2D01G027000.1	Wheat	golgi, plasma membrane, vacuole	37.35	43.81
HORVU5Hr1G087780.4	Barley	extracellular, golgi	37.19	43.79
TraesCS3D01G364700.2	Wheat	extracellular, vacuole	37.02	43.76
TraesCS1A01G417900.1	Wheat	endoplasmic reticulum, golgi	36.18	43.72
TraesCS2D01G026300.1	Wheat	cytosol	36.85	43.65
TraesCS2A01G025000.1	Wheat	golgi, plasma membrane, vacuole	37.19	43.61
TraesCS2D01G027200.1	Wheat	cytosol	38.02	42.91
EES10484	Sorghum	golgi, vacuole	35.01	42.31
TraesCS2B01G035800.1	Wheat	vacuole	34.51	42.3
TraesCSU01G233300.1	Wheat	extracellular, golgi	23.12	42.2
KXG38675	Sorghum	endoplasmic reticulum, vacuole	38.36	42.17
HORVU2Hr1G004030.1	Barley	cytosol	10.22	41.78
CDX75470	Canola	plastid	19.77	38.82
TraesCS2B01G037800.1	Wheat	extracellular	19.1	38.78
HORVU2Hr1G003810.1	Barley	extracellular, mitochondrion	15.91	36.97
HORVU2Hr1G003990.5	Barley	cytosol	31.83	36.19
GSMUA_Achr2P11220_001	Banana	endoplasmic reticulum	41.71	35.07
EES11858	Sorghum	extracellular	4.69	35.0
Zm00001d004288_P001	Maize	extracellular	9.38	29.02
VIT_03s0038g02000.t01	Wine grape	plasma membrane	45.06	26.22
HORVU1Hr1G091390.1	Barley	cytosol, extracellular	3.18	11.66

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:3.30.420.10	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf	InterPro:Amidase_dom
ProteinID:CCB60641	ProteinID:CCB60641.1	UniProt:F6I125	EMBL:FN596508	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015074	InterPro:IPR001584	InterPro:IPR036397	InterPro:IPR036928	InterPro:Integrase_cat-core	PFAM:PF00665
PFAM:PF01425	PFscan:PS50994	PANTHER:PTHR42678	PANTHER:PTHR42678:SF4	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SUPFAM:SSF53098	SUPFAM:SSF75304	UniParc:UPI00021085F8	ArrayExpress:VIT_03s0038g01990	EnsemblPlantsGene:VIT_03s0038g01990	EnsemblPlants:VIT_03s0038g01990.t01

Description

No Description!

Coordinates

chr3:+:1374043..1381233

Molecular Weight (calculated)

65413.3 Da

IEP (calculated)

6.435

GRAVY (calculated)

-0.236

Length

597 amino acids

Sequence
(BLAST)

001: MIETQYNAKV RVLRSDNGGE YQSSDLQKYL EGHDIIHQTT CSNTPQKNGV AERKNRHLLE VVRVSLILPH RHNRGIPKPT YEPELSTIVE YPMSNYVSTH
101: RLSESNKPFV NQLSTVSIPN SVQEALADPR WKAAMNEEMK SLQKNETWEL VECLPGKKPV GCRWIYTVKY KVDGSYALLG AKVGGDAAVV ERLRKAGAVI
201: LGKASMSEWY QFRSLKTRNG WCPRSGQGVN PYVPSGDPCE SNSGSAISVA ANMVAVSLGT ETDGSIICPA DVNSVVGFKP TIGLTSRVGV IPISPRQDSV
301: GPINYESRAC SIYSVDQMFL YHRPICWSVL DAVYVLDAIV GFDPRDGEAT KEASKFIPVG GYKQFLNKDG IAGKRLGVVR NPFSGFYNRS TAISAFEAHL
401: TVLRQRGAIL VDNLEIENVD IILNPYESGE STALLAEFKL NINEYLKELT HSPVRSLAGI IAFNLNNSDL EKTDEYGQEV FIAAEMTNGI GKQERMAMEM
501: MANLSQDGFE KLMMENKLDA TVALGSGMAT VLAIGGYPGV SVPAGYDGDG MPFGICFGGL KGMEPKLIEV AYGFEQATKI RRPPTSPNNL LCPNEPL

Best Arabidopsis Sequence Match ( AT4G34880.2 )
(BLAST)

001: MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL
101: KNTTKLPILH GVPVLLKDSI STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA RGLQGKNPYV LSANPSGSSS
201: GSAISVTANL VAVSLGTETD GSILSPASQN SVVGIKPSVG LTSRAGVVPI SLRQDSIGPI CRTVSDAVHL LDAIVGYDPL DEATKTASEF IPEGGYKQFL
301: TTSGLKGKRL GIVMKHSSLL DHHIKTLRRE GAIVINNLTI PNIEVIVGGT DSGEEIALLA EFKMSLNAYL KELVKSPVRS LADVIAYNEE FAEQEKVKEW
401: GQEVFLTAEA TSGMGEKEKT ALQKMKELSR NGIEKLIEEN KLDAIVTLGS DLSSVLAIGG YPGINVPAGY DSGGVPYGIS FGGLRFSEPK LIEIAFAFEQ
501: ATLIRKPPKF IA

Arabidopsis Description

Amidase family protein [Source:TAIR;Acc:AT4G34880]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.