Factsheet for PGSC0003DMT400004114

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plasma membrane 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 3
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus, plasma membrane
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g01970.t01	Wine grape	cytosol	44.9	31.88
TraesCSU01G233300.1	Wheat	extracellular, golgi	58.5	26.3
TraesCS2B01G037800.1	Wheat	extracellular	52.38	26.19
CDX75470	Canola	plastid	53.06	25.66
Bra011569.1-P	Field mustard	cytosol	61.9	25.0
TraesCS2B01G037500.1	Wheat	cytosol, plastid	58.5	23.56
CDY28936	Canola	plastid	61.9	23.1
TraesCS2B01G036000.1	Wheat	cytosol	42.18	22.06
HORVU2Hr1G003810.1	Barley	extracellular, mitochondrion	38.1	21.79
Zm00001d004287_P001	Maize	cytosol	44.9	21.02
HORVU1Hr1G091420.1	Barley	cytosol, plastid	57.14	20.49
TraesCS2B01G037200.1	Wheat	plastid	42.18	19.94
CDY51679	Canola	endoplasmic reticulum, vacuole	62.59	19.62
Bra022128.1-P	Field mustard	endoplasmic reticulum, vacuole	61.9	18.31
TraesCS2D01G062200.1	Wheat	cytosol	38.78	18.27
PGSC0003DMT400005106	Potato	extracellular	52.38	18.16
TraesCS2B01G037100.1	Wheat	golgi	61.9	17.91
TraesCS2D01G027000.1	Wheat	golgi, plasma membrane, vacuole	61.9	17.88
TraesCS2D01G026900.1	Wheat	extracellular, golgi	60.54	17.76
TraesCS2B01G037400.1	Wheat	nucleus	60.54	17.69
TraesCS2A01G025000.1	Wheat	golgi, plasma membrane, vacuole	61.22	17.68
TraesCS2A01G025200.1	Wheat	extracellular	61.22	17.61
TraesCS2B01G035200.1	Wheat	cytosol	58.5	17.55
EES11861	Sorghum	extracellular, golgi, plasma membrane	61.22	17.54
TraesCSU01G008400.1	Wheat	extracellular, golgi	60.54	17.52
TraesCS2B01G035900.1	Wheat	extracellular, golgi	59.86	17.5
PGSC0003DMT400048145	Potato	extracellular	59.86	17.43
VIT_03s0038g01990.t01	Wine grape	nucleus, peroxisome, plastid	70.75	17.42
AT4G34880.2	Thale cress	vacuole	60.54	17.38
HORVU5Hr1G087780.4	Barley	extracellular, golgi	59.86	17.36
TraesCS3D01G364700.2	Wheat	extracellular, vacuole	59.18	17.23
PGSC0003DMT400004112	Potato	extracellular	63.27	17.1
TraesCS1A01G417900.1	Wheat	endoplasmic reticulum, golgi	57.14	17.0
KXG36216	Sorghum	cytosol	57.14	17.0
TraesCS2A01G064000.1	Wheat	extracellular, vacuole	58.5	16.96
TraesCS2D01G026300.1	Wheat	cytosol	57.82	16.87
EER97209	Sorghum	extracellular	58.5	16.86
EER99375	Sorghum	extracellular	58.5	16.86
TraesCS1D01G425500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	59.18	16.83
TraesCS1B01G448000.1	Wheat	extracellular, vacuole	58.5	16.63
HORVU2Hr1G003980.8	Barley	cytosol	43.54	16.62
EES10484	Sorghum	golgi, vacuole	55.78	16.6
TraesCS2D01G027200.1	Wheat	cytosol	58.5	16.26
KXG38675	Sorghum	endoplasmic reticulum, vacuole	57.82	15.65
HORVU2Hr1G003990.5	Barley	cytosol	55.1	15.43
TraesCS2B01G035800.1	Wheat	vacuole	48.98	14.78
CDX69095	Canola	cytosol	38.1	14.32
GSMUA_Achr2P11220_001	Banana	endoplasmic reticulum	61.22	12.68
TraesCSU01G211000.1	Wheat	cytosol	21.77	11.85
Zm00001d004288_P001	Maize	extracellular	9.52	7.25
HORVU2Hr1G004030.1	Barley	cytosol	6.12	6.16
HORVU1Hr1G091390.1	Barley	cytosol, extracellular	4.08	3.68
HORVU2Hr1G004020.1	Barley	cytosol, mitochondrion	1.36	3.33
TraesCS2B01G036100.1	Wheat	cytosol	0.68	0.5
EES11858	Sorghum	extracellular	0.0	0.0
CDX75471	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400004114	EnsemblPlantsGene:PGSC0003DMG400001626	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase_dom	InterPro:IPR036928
KEGG:00970+6.3.5.7	PANTHER:PTHR42678	PANTHER:PTHR42678:SF4	PFAM:PF01425	PGSC:PGSC0003DMG400001626	SEG:seg
SUPFAM:SSF75304	UniParc:UPI000296CD6E	UniProt:M0ZMX1	MapMan:35.1	:	:

Description

Amidase [Source:PGSC_GENE;Acc:PGSC0003DMG400001626]

Coordinates

chr1:+:87237380..87240391

Molecular Weight (calculated)

15580.5 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.002

Length

147 amino acids

Sequence
(BLAST)

001: MIEWYEFRSL SGVPNGWCAR SGQGVNPYCP SGSPCGSSSG CAISVAANMA AVSLGTETHC SIICPADHNS VVRLKPTVGL TSWAGIIPMT PHWDTVGPIC
101: RNVTDAVYML DVIVGSDPRD EVTTEAAKYI PEGGYKQFLV EDGLKGK

Best Arabidopsis Sequence Match ( AT4G34880.2 )
(BLAST)

001: MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL
101: KNTTKLPILH GVPVLLKDSI STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA RGLQGKNPYV LSANPSGSSS
201: GSAISVTANL VAVSLGTETD GSILSPASQN SVVGIKPSVG LTSRAGVVPI SLRQDSIGPI CRTVSDAVHL LDAIVGYDPL DEATKTASEF IPEGGYKQFL
301: TTSGLKGKRL GIVMKHSSLL DHHIKTLRRE GAIVINNLTI PNIEVIVGGT DSGEEIALLA EFKMSLNAYL KELVKSPVRS LADVIAYNEE FAEQEKVKEW
401: GQEVFLTAEA TSGMGEKEKT ALQKMKELSR NGIEKLIEEN KLDAIVTLGS DLSSVLAIGG YPGINVPAGY DSGGVPYGIS FGGLRFSEPK LIEIAFAFEQ
501: ATLIRKPPKF IA

Arabidopsis Description

Amidase family protein [Source:TAIR;Acc:AT4G34880]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.