CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 6
extracellular 6
endoplasmic reticulum 5
vacuole 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42703	Soybean	cytosol, extracellular	16.02	92.22
KRH42701	Soybean	cytosol	78.96	83.47
KRH42704	Soybean	cytosol	28.96	71.43
CDY28936	Canola	plastid	49.42	64.97
CDY51679	Canola	endoplasmic reticulum, vacuole	54.83	60.55
Bra022128.1-P	Field mustard	endoplasmic reticulum, vacuole	57.92	60.36
Bra011569.1-P	Field mustard	cytosol	42.28	60.16
PGSC0003DMT400048145	Potato	extracellular	58.11	59.6
Solyc11g071550.1.1	Tomato	extracellular, nucleus	57.14	58.5
PGSC0003DMT400005106	Potato	extracellular	47.88	58.49
AT4G34880.2	Thale cress	vacuole	55.6	56.25
CDX69095	Canola	cytosol	42.28	56.01
TraesCS2B01G037200.1	Wheat	plastid	33.59	55.95
TraesCS2B01G035200.1	Wheat	cytosol	52.51	55.51
TraesCSU01G233300.1	Wheat	extracellular, golgi	34.94	55.35
KXG36216	Sorghum	cytosol	51.93	54.45
TraesCS2B01G037800.1	Wheat	extracellular	30.89	54.42
TraesCS3D01G364700.2	Wheat	extracellular, vacuole	52.9	54.26
HORVU5Hr1G087780.4	Barley	extracellular, golgi	53.09	54.24
TraesCS2D01G026300.1	Wheat	cytosol	52.7	54.17
Zm00001d004287_P001	Maize	cytosol	32.82	54.14
TraesCS2D01G026900.1	Wheat	extracellular, golgi	52.12	53.89
TraesCS2B01G037400.1	Wheat	nucleus	52.32	53.88
TraesCS2A01G025200.1	Wheat	extracellular	53.09	53.82
TraesCS2A01G064000.1	Wheat	extracellular, vacuole	52.51	53.65
TraesCS2D01G027000.1	Wheat	golgi, plasma membrane, vacuole	52.7	53.63
TraesCS2B01G037100.1	Wheat	golgi	52.32	53.35
TraesCS2B01G035900.1	Wheat	extracellular, golgi	51.74	53.28
EES11861	Sorghum	extracellular, golgi, plasma membrane	52.7	53.22
TraesCS2A01G025000.1	Wheat	golgi, plasma membrane, vacuole	52.12	53.05
EER99375	Sorghum	extracellular	52.12	52.94
TraesCSU01G008400.1	Wheat	extracellular, golgi	51.74	52.76
TraesCS2D01G027200.1	Wheat	cytosol	53.86	52.74
EER97209	Sorghum	extracellular	51.16	51.96
TraesCS2B01G036000.1	Wheat	cytosol	28.19	51.96
TraesCS2B01G035800.1	Wheat	vacuole	48.46	51.54
TraesCS1B01G448000.1	Wheat	extracellular, vacuole	51.35	51.45
TraesCS2D01G062200.1	Wheat	cytosol	30.89	51.28
TraesCS1D01G425500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.97	51.06
CDX75470	Canola	plastid	29.54	50.33
Zm00001d004288_P001	Maize	extracellular	18.73	50.26
HORVU2Hr1G003810.1	Barley	extracellular, mitochondrion	24.9	50.19
CDX75471	Canola	cytosol	19.11	50.0
TraesCS2B01G037500.1	Wheat	cytosol, plastid	35.14	49.86
HORVU2Hr1G003980.8	Barley	cytosol	36.87	49.61
TraesCS1A01G417900.1	Wheat	endoplasmic reticulum, golgi	46.91	49.19
EES10484	Sorghum	golgi, vacuole	46.91	49.19
TraesCSU01G211000.1	Wheat	cytosol	25.48	48.89
HORVU2Hr1G004020.1	Barley	cytosol, mitochondrion	5.6	48.33
HORVU1Hr1G091420.1	Barley	cytosol, plastid	38.22	48.29
KXG38675	Sorghum	endoplasmic reticulum, vacuole	49.61	47.33
TraesCS2B01G036100.1	Wheat	cytosol	18.34	47.03
HORVU2Hr1G004030.1	Barley	cytosol	11.97	42.47
GSMUA_Achr2P11220_001	Banana	endoplasmic reticulum	52.7	38.45
EES11858	Sorghum	extracellular	5.79	37.5
HORVU2Hr1G003990.5	Barley	cytosol	36.29	35.81
HORVU1Hr1G091390.1	Barley	cytosol, extracellular	10.62	33.74

Protein Annotations

KEGG:00970+6.3.5.7	EntrezGene:100807918	Gene3D:3.90.1300.10	MapMan:35.1	UniProt:A0A0R0JVQ5	EMBL:ACUP02003292
InterPro:AS_sf	InterPro:Amidase_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G149500	InterPro:IPR036928	EnsemblPlants:KRH58810
ProteinID:KRH58810	ProteinID:KRH58810.1	PFAM:PF01425	PANTHER:PTHR42678	PANTHER:PTHR42678:SF10	MetaCyc:PWY-5921
SUPFAM:SSF75304	TMHMM:TMhelix	UniParc:UPI00023396D4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:34369898..34373009

Molecular Weight (calculated)

56047.9 Da

IEP (calculated)

9.532

GRAVY (calculated)

-0.006

Length

518 amino acids

Sequence
(BLAST)

001: MACNTVGCFS LFFQFILLIP LVTFSSLFLP TTTAKGFSIE EATVYDLQLA FRRNQLTSRQ LVEFYHKQIQ TQNPVLRGVL ELNPDALAQA DKADHERKAN
101: APGTLPALHG IPILVKDNIA TKDKMNTTAG SFALLGSVVP RDAGVVTRLR EAGAIILGKA TLSEWSHYRS NDAPSGWNGR GGEGKNPYTM DGPCGSSSGS
201: AISVAANLVA VSLGSETDGS ILCPSGSNSV VGIKPTVGLT SRAGVVPITP LQDTVGPICR TVSDAALVLE TIAGIDVNDN ATIKASKYLP RGGYAQFLKK
301: DGLRGKRLGV VRTFYGFGND TFMHDTFELH LKTIRQKGAV LVDNLEINNI QEIFNDQSED IAMAYEFKLS LNAYLRDLVA SPVRSLADVI AFNKKHPKLE
401: KLKEYGQDLM LIAQKTNGVR ELKEAVLNMA RLSHNGFEKL MITKKLDAVV VPFSFFVSIL ARGGYPGVTV PAGYEKGAPF GIIFGGLKGS EPKLIEIAYS
501: FEQATLIRKP PPLRKLKV

Best Arabidopsis Sequence Match ( AT4G34880.2 )
(BLAST)

001: MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL
101: KNTTKLPILH GVPVLLKDSI STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA RGLQGKNPYV LSANPSGSSS
201: GSAISVTANL VAVSLGTETD GSILSPASQN SVVGIKPSVG LTSRAGVVPI SLRQDSIGPI CRTVSDAVHL LDAIVGYDPL DEATKTASEF IPEGGYKQFL
301: TTSGLKGKRL GIVMKHSSLL DHHIKTLRRE GAIVINNLTI PNIEVIVGGT DSGEEIALLA EFKMSLNAYL KELVKSPVRS LADVIAYNEE FAEQEKVKEW
401: GQEVFLTAEA TSGMGEKEKT ALQKMKELSR NGIEKLIEEN KLDAIVTLGS DLSSVLAIGG YPGINVPAGY DSGGVPYGIS FGGLRFSEPK LIEIAFAFEQ
501: ATLIRKPPKF IA

Arabidopsis Description

Amidase family protein [Source:TAIR;Acc:AT4G34880]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.