Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018908_P001 | Maize | mitochondrion | 84.12 | 84.62 |
| EER95920 | Sorghum | mitochondrion | 84.12 | 80.79 |
| Os07t0173100-00 | Rice | mitochondrion | 76.47 | 76.02 |
| TraesCS2B01G259800.1 | Wheat | mitochondrion | 68.82 | 68.82 |
| OQU90686 | Sorghum | cytosol, mitochondrion | 63.53 | 68.79 |
| TraesCS2D01G246400.1 | Wheat | mitochondrion | 68.24 | 68.24 |
| GSMUA_Achr9P25740_001 | Banana | mitochondrion | 52.94 | 55.9 |
| GSMUA_Achr9P10550_001 | Banana | mitochondrion | 54.12 | 52.57 |
| Solyc09g065370.1.1 | Tomato | mitochondrion | 47.06 | 49.38 |
| PGSC0003DMT400049751 | Potato | mitochondrion | 47.06 | 49.38 |
| PGSC0003DMT400051869 | Potato | plastid | 41.18 | 47.62 |
| Zm00001d027742_P001 | Maize | cytosol | 45.29 | 47.53 |
| AT4G14830.1 | Thale cress | cytosol | 41.76 | 46.71 |
| KRH77848 | Soybean | mitochondrion | 37.65 | 46.38 |
| Solyc06g084220.1.1 | Tomato | plastid | 39.41 | 46.21 |
| CDY34247 | Canola | cytosol | 40.0 | 41.98 |
| Bra023821.1-P | Field mustard | cytosol | 40.0 | 41.98 |
| KRH71407 | Soybean | mitochondrion | 34.12 | 41.73 |
| VIT_07s0151g00830.t01 | Wine grape | cytosol | 40.59 | 41.57 |
| CDX98212 | Canola | mitochondrion | 39.41 | 41.1 |
| PGSC0003DMT400042036 | Potato | cytosol | 40.59 | 41.07 |
| KRH35512 | Soybean | endoplasmic reticulum, extracellular | 46.47 | 40.72 |
| KRG91317 | Soybean | endoplasmic reticulum, extracellular | 46.47 | 40.72 |
| PGSC0003DMT400034952 | Potato | cytosol | 35.29 | 40.54 |
| PGSC0003DMT400075166 | Potato | cytosol | 32.35 | 40.44 |
| Solyc09g082150.1.1 | Tomato | cytosol | 24.71 | 38.53 |
| PGSC0003DMT400082124 | Potato | cytosol, mitochondrion | 42.35 | 38.3 |
| KRH32032 | Soybean | mitochondrion | 27.65 | 36.72 |
| Solyc09g061350.1.1 | Tomato | cytosol | 22.94 | 35.78 |
| AT3G22530.1 | Thale cress | endoplasmic reticulum, extracellular | 41.18 | 35.35 |
| Bra039959.1-P | Field mustard | extracellular | 38.82 | 34.38 |
| Solyc06g054150.1.1 | Tomato | extracellular, golgi, mitochondrion, plastid | 41.18 | 34.15 |
| CDY10290 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 38.82 | 33.67 |
| CDY10651 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 38.24 | 33.16 |
| VIT_05s0020g03610.t01 | Wine grape | cytosol | 46.47 | 32.78 |
| Solyc09g061510.1.1 | Tomato | cytosol | 17.65 | 32.26 |
| KRH55262 | Soybean | cytosol, plasma membrane, plastid | 30.0 | 29.48 |
Protein Annotations
| EnsemblPlants:Zm00001d007836_P001 | EnsemblPlants:Zm00001d007836_T001 | EnsemblPlantsGene:Zm00001d007836 | PANTHER:PTHR33879 | PANTHER:PTHR33879:SF3 | ProteinID:ONM27709.1 |
| SEG:seg | UniParc:UPI00022175CF | UniProt:A0A1D6F981 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2:-:240565474..240565986
Molecular Weight (calculated)
17434.8 Da
IEP (calculated)
6.946
GRAVY (calculated)
0.122
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVHPAPRKR TIAVQRCASA AAGALGGKKL RRLPHIFDKV LELPFAADAD VSVEEDAAAL RFVAAADEFS LAGARAHAVE IHPGVTKVVV RGLSSSSLGG
101: DGDDDDDGAA AAAFELDRWR FRLPPCTRPA MATATYAAGE LVVTVPKGAG PGDGGAAAVL GGTERVLVLV
101: DGDDDDDGAA AAAFELDRWR FRLPPCTRPA MATATYAAGE LVVTVPKGAG PGDGGAAAVL GGTERVLVLV
001: MKIHPLPRNE NNNNLIHHAR DPTREPGKKL RRLPHIFSRV LELPLKSDAD VAVEESHDCF RFVAETDGGG GGGVRAYMVE IHPGVTKILV RTNGSSSLGL
101: SLDELELDVW RFRLPESTRP ELVTVDCDGD GELIVTVPKI EDNGRDLIVL VQ
101: SLDELELDVW RFRLPESTRP ELVTVDCDGD GELIVTVPKI EDNGRDLIVL VQ
Arabidopsis Description
HSP1HSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.