Factsheet for GSMUA_Achr9P25740_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT3G22530.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT3G22530.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT3G22530.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT3G22530.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT3G22530.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT3G22530.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT3G22530.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088
AT4G14830.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT4G14830.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT4G14830.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT4G14830.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT4G14830.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT4G14830.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT4G14830.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT4G14830.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10550_001	Banana	mitochondrion	70.19	64.57
PGSC0003DMT400049751	Potato	mitochondrion	57.14	56.79
Solyc09g065370.1.1	Tomato	mitochondrion	56.52	56.17
TraesCS2B01G259800.1	Wheat	mitochondrion	59.01	55.88
TraesCS2D01G246400.1	Wheat	mitochondrion	58.39	55.29
Zm00001d018908_P001	Maize	mitochondrion	57.14	54.44
Zm00001d007836_P001	Maize	mitochondrion	55.9	52.94
Os07t0173100-00	Rice	mitochondrion	55.9	52.63
EER95920	Sorghum	mitochondrion	57.14	51.98
PGSC0003DMT400051869	Potato	plastid	45.96	50.34
AT4G14830.1	Thale cress	cytosol	47.2	50.0
Solyc06g084220.1.1	Tomato	plastid	44.72	49.66
KRG91317	Soybean	endoplasmic reticulum, extracellular	56.52	46.91
KRH77848	Soybean	mitochondrion	39.75	46.38
Bra023821.1-P	Field mustard	cytosol	46.58	46.3
PGSC0003DMT400034952	Potato	cytosol	42.24	45.95
KRH35512	Soybean	endoplasmic reticulum, extracellular	55.28	45.88
Zm00001d027742_P001	Maize	cytosol	45.96	45.68
CDY34247	Canola	cytosol	45.96	45.68
OQU90686	Sorghum	cytosol, mitochondrion	44.1	45.22
VIT_07s0151g00830.t01	Wine grape	cytosol	46.58	45.18
Os03t0159900-01	Rice	cytosol	45.34	45.06
CDX98212	Canola	mitochondrion	45.34	44.79
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	52.17	44.68
KRH71407	Soybean	mitochondrion	37.89	43.88
EER92826	Sorghum	cytosol	45.96	43.79
PGSC0003DMT400042036	Potato	cytosol	45.34	43.45
PGSC0003DMT400075166	Potato	cytosol	36.65	43.38
Solyc09g082150.1.1	Tomato	cytosol	29.19	43.12
TraesCS4A01G030000.1	Wheat	cytosol	39.75	42.11
TraesCS4D01G274600.1	Wheat	cytosol	39.75	42.11
TraesCS4B01G276100.1	Wheat	cytosol	39.13	41.45
Solyc09g061350.1.1	Tomato	cytosol	27.95	41.28
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	50.31	40.91
Bra039959.1-P	Field mustard	extracellular	48.45	40.62
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	49.07	40.31
VIT_05s0020g03610.t01	Wine grape	cytosol	59.01	39.42
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	47.2	38.78
Solyc09g061510.1.1	Tomato	cytosol	21.74	37.63
KRH32032	Soybean	mitochondrion	29.19	36.72
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	44.1	34.63
KRH55262	Soybean	cytosol, plasma membrane, plastid	36.02	33.53
HORVU4Hr1G073230.1	Barley	plastid	42.24	25.19

Protein Annotations

EnsemblPlants:GSMUA_Achr9P25740_001	EnsemblPlants:GSMUA_Achr9T25740_001	EnsemblPlantsGene:GSMUA_Achr9G25740_001	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR33879
PANTHER:PTHR33879:SF3	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0002969F52	UniProt:M0U3I1	MapMan:35.2

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G25740_001]

Coordinates

chr9:+:30232112..30232739

Molecular Weight (calculated)

17735.3 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.227

Length

161 amino acids

Sequence
(BLAST)

001: MRVHPAPRKR NITFRYDVNP AATAAAVLNR QKKLRRLPHI FSKVLELPFE ADADVAIEEN SEGFRFVAAT DDLWGNVRAH AIEIHPGVMK VVVRDGGGVD
101: LEEGLELDRW RFRLPPSTRP ALATASYTGG VLVVTVPKGA RSEEENGGAQ EFLGGRLVIV Q

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.