Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra034407.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G22530.1 | Bra034407.1-P | AT1G35670.1 | 19130088 |
AT4G14830.1 | Bra034407.1-P | AT1G35670.1 | 19130088 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY10651 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 97.92 | 95.92 |
Bra023821.1-P | Field mustard | cytosol | 64.06 | 75.93 |
AT4G14830.1 | Thale cress | cytosol | 58.85 | 74.34 |
AT3G22530.1 | Thale cress | endoplasmic reticulum, extracellular | 71.88 | 69.7 |
KRG91317 | Soybean | endoplasmic reticulum, extracellular | 51.56 | 51.03 |
KRH35512 | Soybean | endoplasmic reticulum, extracellular | 50.52 | 50.0 |
PGSC0003DMT400034952 | Potato | cytosol | 37.5 | 48.65 |
GSMUA_Achr9P25740_001 | Banana | mitochondrion | 40.62 | 48.45 |
PGSC0003DMT400075166 | Potato | cytosol | 32.81 | 46.32 |
Solyc09g061350.1.1 | Tomato | cytosol | 26.04 | 45.87 |
GSMUA_Achr9P10550_001 | Banana | mitochondrion | 41.15 | 45.14 |
KRH77848 | Soybean | mitochondrion | 31.77 | 44.2 |
TraesCS2B01G259800.1 | Wheat | mitochondrion | 39.06 | 44.12 |
Solyc09g061510.1.1 | Tomato | cytosol | 21.35 | 44.09 |
Solyc09g082150.1.1 | Tomato | cytosol | 25.0 | 44.04 |
TraesCS2D01G246400.1 | Wheat | mitochondrion | 38.54 | 43.53 |
PGSC0003DMT400082124 | Potato | cytosol, mitochondrion | 42.19 | 43.09 |
PGSC0003DMT400042036 | Potato | cytosol | 37.5 | 42.86 |
TraesCS4B01G276100.1 | Wheat | cytosol | 33.33 | 42.11 |
Zm00001d027742_P001 | Maize | cytosol | 35.42 | 41.98 |
TraesCS4A01G030000.1 | Wheat | cytosol | 32.81 | 41.45 |
TraesCS4D01G274600.1 | Wheat | cytosol | 32.81 | 41.45 |
EER92826 | Sorghum | cytosol | 35.94 | 40.83 |
Os03t0159900-01 | Rice | cytosol | 34.38 | 40.74 |
Zm00001d018908_P001 | Maize | mitochondrion | 35.42 | 40.24 |
Os07t0173100-00 | Rice | mitochondrion | 35.42 | 39.77 |
Zm00001d007836_P001 | Maize | mitochondrion | 34.38 | 38.82 |
VIT_05s0020g03610.t01 | Wine grape | cytosol | 48.44 | 38.59 |
EER95920 | Sorghum | mitochondrion | 35.42 | 38.42 |
Solyc06g054150.1.1 | Tomato | extracellular, golgi, mitochondrion, plastid | 39.06 | 36.59 |
OQU90686 | Sorghum | cytosol, mitochondrion | 29.69 | 36.31 |
KRH55262 | Soybean | cytosol, plasma membrane, plastid | 28.12 | 31.21 |
HORVU4Hr1G073230.1 | Barley | plastid | 35.42 | 25.19 |
Protein Annotations
Description
AT3G22530 (E=2e-066) | unknown protein
Coordinates
chrA05:+:15406261..15406839
Molecular Weight (calculated)
21710.6 Da
IEP (calculated)
6.418
GRAVY (calculated)
-0.045
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLIPWNRSF PSLILSLLII LTIEKPDPEA MRVHPIPRNL NNTLIHHHHH RNPTREPGKN LRRLPHIFSR VLELPLRSEA DVAVEEKHDC FRFVAETEGL
101: CDGGEMRAYV VDIHPGITKI VVRTNGLSLG LSLDELELDM WRFRLPETTR PELVTVVCVD GILIVTVPKM VPEEEDGGFG QGMASGRLVL VQ
101: CDGGEMRAYV VDIHPGITKI VVRTNGLSLG LSLDELELDM WRFRLPETTR PELVTVVCVD GILIVTVPKM VPEEEDGGFG QGMASGRLVL VQ
001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
Arabidopsis Description
Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.