Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075166 | Potato | cytosol | 67.86 | 83.82 |
| Solyc06g054150.1.1 | Tomato | extracellular, golgi, mitochondrion, plastid | 87.5 | 71.71 |
| PGSC0003DMT400034952 | Potato | cytosol | 49.4 | 56.08 |
| PGSC0003DMT400082124 | Potato | cytosol, mitochondrion | 60.12 | 53.72 |
| AT4G14830.1 | Thale cress | cytosol | 45.24 | 50.0 |
| KRH77848 | Soybean | mitochondrion | 39.29 | 47.83 |
| GSMUA_Achr9P25740_001 | Banana | mitochondrion | 43.45 | 45.34 |
| PGSC0003DMT400051869 | Potato | plastid | 39.29 | 44.9 |
| PGSC0003DMT400049751 | Potato | mitochondrion | 42.86 | 44.44 |
| KRH35512 | Soybean | endoplasmic reticulum, extracellular | 51.19 | 44.33 |
| KRG91317 | Soybean | endoplasmic reticulum, extracellular | 50.6 | 43.81 |
| TraesCS2B01G259800.1 | Wheat | mitochondrion | 44.05 | 43.53 |
| CDY34247 | Canola | cytosol | 41.07 | 42.59 |
| TraesCS2D01G246400.1 | Wheat | mitochondrion | 42.86 | 42.35 |
| CDX98212 | Canola | mitochondrion | 41.07 | 42.33 |
| GSMUA_Achr9P10550_001 | Banana | mitochondrion | 44.05 | 42.29 |
| Bra023821.1-P | Field mustard | cytosol | 40.48 | 41.98 |
| Os07t0173100-00 | Rice | mitochondrion | 42.26 | 41.52 |
| EER92826 | Sorghum | cytosol | 41.67 | 41.42 |
| Os03t0159900-01 | Rice | cytosol | 39.88 | 41.36 |
| TraesCS4A01G030000.1 | Wheat | cytosol | 36.9 | 40.79 |
| TraesCS4D01G274600.1 | Wheat | cytosol | 36.9 | 40.79 |
| TraesCS4B01G276100.1 | Wheat | cytosol | 36.9 | 40.79 |
| Zm00001d027742_P001 | Maize | cytosol | 39.29 | 40.74 |
| Zm00001d007836_P001 | Maize | mitochondrion | 41.07 | 40.59 |
| Zm00001d018908_P001 | Maize | mitochondrion | 40.48 | 40.24 |
| AT3G22530.1 | Thale cress | endoplasmic reticulum, extracellular | 45.24 | 38.38 |
| EER95920 | Sorghum | mitochondrion | 39.88 | 37.85 |
| CDY10651 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.05 | 37.76 |
| OQU90686 | Sorghum | cytosol, mitochondrion | 35.12 | 37.58 |
| Bra039959.1-P | Field mustard | extracellular | 42.86 | 37.5 |
| CDY10290 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.26 | 36.22 |
| VIT_05s0020g03610.t01 | Wine grape | cytosol | 47.02 | 32.78 |
| KRH55262 | Soybean | cytosol, plasma membrane, plastid | 32.14 | 31.21 |
| HORVU4Hr1G073230.1 | Barley | plastid | 37.5 | 23.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042036 | EnsemblPlantsGene:PGSC0003DMG400016305 | PANTHER:PTHR33879 | PANTHER:PTHR33879:SF3 | PGSC:PGSC0003DMG400016305 | UniParc:UPI000295EE9A |
| UniProt:M1BCE0 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016305]
Coordinates
chr6:+:40403666..40404767
Molecular Weight (calculated)
18794.4 Da
IEP (calculated)
6.018
GRAVY (calculated)
-0.383
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVHPLSLKP NIGGIDSNFS EQQQHIPNSA MKKLRRLPHV FNYFLELPFC SDADVAVEEK EGFFRFVARI ELEGAGNGQV RAQAVEIHPG VTKIVVRKGN
101: GDGDEDEQLK VDTWRYRLPA SAMPKLATAV FVDGELIVTV PKDDHGRGEF DNGSRGVWRD VDQLVLVQ
101: GDGDEDEQLK VDTWRYRLPA SAMPKLATAV FVDGELIVTV PKDDHGRGEF DNGSRGVWRD VDQLVLVQ
001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
Arabidopsis Description
Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.