CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73342
CDX90725
CDY05064
CDY37101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	CDX73342	AT1G35670.1	19130088
AT3G22530.1	CDY37101	AT1G35670.1	19130088
AT3G22530.1	CDX90725	AT4G09570.1	19130088
AT3G22530.1	CDY05064	AT4G09570.1	19130088
AT4G14830.1	CDX73342	AT1G35670.1	19130088
AT4G14830.1	CDY37101	AT1G35670.1	19130088
AT4G14830.1	CDX90725	AT4G09570.1	19130088
AT4G14830.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	89.8	89.8
CDY34247	Canola	cytosol	64.29	77.78
CDX98212	Canola	mitochondrion	64.29	77.3
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	70.41	69.7
AT4G14830.1	Thale cress	cytosol	52.55	67.76
KRG91317	Soybean	endoplasmic reticulum, extracellular	49.49	50.0
KRH35512	Soybean	endoplasmic reticulum, extracellular	48.47	48.97
GSMUA_Achr9P25740_001	Banana	mitochondrion	38.78	47.2
PGSC0003DMT400034952	Potato	cytosol	35.2	46.62
PGSC0003DMT400075166	Potato	cytosol	31.12	44.85
Solyc09g061350.1.1	Tomato	cytosol	24.49	44.04
KRH77848	Soybean	mitochondrion	30.61	43.48
Solyc09g082150.1.1	Tomato	cytosol	23.98	43.12
Solyc09g061510.1.1	Tomato	cytosol	20.41	43.01
GSMUA_Achr9P10550_001	Banana	mitochondrion	38.27	42.86
TraesCS2B01G259800.1	Wheat	mitochondrion	36.73	42.35
PGSC0003DMT400042036	Potato	cytosol	36.22	42.26
TraesCS2D01G246400.1	Wheat	mitochondrion	36.22	41.76
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	39.8	41.49
Zm00001d018908_P001	Maize	mitochondrion	34.69	40.24
TraesCS4B01G276100.1	Wheat	cytosol	31.12	40.13
Zm00001d027742_P001	Maize	cytosol	33.16	40.12
TraesCS4A01G030000.1	Wheat	cytosol	30.61	39.47
TraesCS4D01G274600.1	Wheat	cytosol	30.61	39.47
Os07t0173100-00	Rice	mitochondrion	34.18	39.18
EER92826	Sorghum	cytosol	33.67	39.05
Os03t0159900-01	Rice	cytosol	32.14	38.89
Zm00001d007836_P001	Maize	mitochondrion	33.67	38.82
EER95920	Sorghum	mitochondrion	34.69	38.42
OQU90686	Sorghum	cytosol, mitochondrion	29.08	36.31
VIT_05s0020g03610.t01	Wine grape	cytosol	44.39	36.1
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	37.24	35.61
KRH55262	Soybean	cytosol, plasma membrane, plastid	27.55	31.21
HORVU4Hr1G073230.1	Barley	plastid	34.18	24.81

Protein Annotations

EnsemblPlants:CDY10290	EnsemblPlantsGene:GSBRNA2T00032135001	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	ProteinID:CDY10290	ProteinID:CDY10290.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EEC32F	UniProt:A0A078F6X8	MapMan:35.2	:

Description

BnaC05g29890DBnaC05g29890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6X8]

Coordinates

chrLK032002:-:108535..109535

Molecular Weight (calculated)

22075.1 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.077

Length

196 amino acids

Sequence
(BLAST)

001: MVLIPSNRSH FLFPSLILSL LIILTIEKPD PEAMRVHPIP RNLNNNNTLI HHHRRNPTRE PGKNLRRLPH IFNRVLELPL RSEANVSVEE KHDCFRFVAE
101: TEGLCDGGEM RAYVVDIHPG ITKIVVRTNG LSLGLSLDEL ELDMWRFRLP ETTRPELVTV VCVGGVLIVT VPKMVPEEED GGFGQGMGSG RLVLVQ

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.