Factsheet for PGSC0003DMT400082124

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT3G22530.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT3G22530.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G22530.1	PGSC0003DMT400067082	AT4G09570.1	19130088
AT4G14830.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT4G14830.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT4G14830.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT4G14830.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082150.1.1	Tomato	cytosol	47.87	82.57
PGSC0003DMT400075166	Potato	cytosol	45.21	62.5
PGSC0003DMT400034952	Potato	cytosol	47.87	60.81
PGSC0003DMT400042036	Potato	cytosol	53.72	60.12
GSMUA_Achr9P25740_001	Banana	mitochondrion	44.68	52.17
KRH35512	Soybean	endoplasmic reticulum, extracellular	53.19	51.55
KRG91317	Soybean	endoplasmic reticulum, extracellular	52.13	50.52
AT4G14830.1	Thale cress	cytosol	40.43	50.0
PGSC0003DMT400051869	Potato	plastid	38.83	49.66
CDY34247	Canola	cytosol	42.55	49.38
Bra023821.1-P	Field mustard	cytosol	42.55	49.38
CDX98212	Canola	mitochondrion	42.55	49.08
PGSC0003DMT400049751	Potato	mitochondrion	42.02	48.77
KRH77848	Soybean	mitochondrion	35.11	47.83
GSMUA_Achr9P10550_001	Banana	mitochondrion	42.55	45.71
EER92826	Sorghum	cytosol	40.96	45.56
TraesCS2B01G259800.1	Wheat	mitochondrion	40.43	44.71
Os07t0173100-00	Rice	mitochondrion	39.89	43.86
Zm00001d027742_P001	Maize	cytosol	37.77	43.83
TraesCS2D01G246400.1	Wheat	mitochondrion	39.36	43.53
Os03t0159900-01	Rice	cytosol	37.23	43.21
EER95920	Sorghum	mitochondrion	39.89	42.37
Zm00001d007836_P001	Maize	mitochondrion	38.3	42.35
Bra039959.1-P	Field mustard	extracellular	43.09	42.19
Zm00001d018908_P001	Maize	mitochondrion	37.77	42.01
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	43.62	41.41
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	42.55	40.82
TraesCS4A01G030000.1	Wheat	cytosol	32.98	40.79
TraesCS4B01G276100.1	Wheat	cytosol	32.98	40.79
TraesCS4D01G274600.1	Wheat	cytosol	32.45	40.13
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.49	39.8
VIT_05s0020g03610.t01	Wine grape	cytosol	48.94	38.17
OQU90686	Sorghum	cytosol, mitochondrion	31.38	37.58
KRH55262	Soybean	cytosol, plasma membrane, plastid	29.79	32.37
HORVU4Hr1G073230.1	Barley	plastid	34.57	24.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400082124	EnsemblPlantsGene:PGSC0003DMG400032275	EntrezGene:102603793	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	PGSC:PGSC0003DMG400032275
RefSeq:XP_006360781.1	SEG:seg	UniParc:UPI000296A891	UniProt:M1D5P3	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032275]

Coordinates

chr9:-:53869012..53869963

Molecular Weight (calculated)

20081.3 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.048

Length

188 amino acids

Sequence
(BLAST)

001: MRVHPMSLKR NIAIREGIGL GSDSDSEQRE QILAAMEGNP MKKLRKLPHV FGKVLELPFR SDADVAVEEG PEFFRFVAVM EFDDGGSGGA GGVRVQAVEI
101: HTGITKIVVR NGAGDGGVAG GIEELLLEEL KVDTWRFRLP ATTMPELATA VFVDGELIVT VPKAGRGGGE FADGRDVWGG GGRLVLVQ

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.