Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G030000.1 | Wheat | cytosol | 97.37 | 97.37 |
| TraesCS4B01G276100.1 | Wheat | cytosol | 94.08 | 94.08 |
| Os03t0159900-01 | Rice | cytosol | 57.89 | 54.32 |
| EER92826 | Sorghum | cytosol | 59.21 | 53.25 |
| Zm00001d027742_P001 | Maize | cytosol | 56.58 | 53.09 |
| HORVU4Hr1G073230.1 | Barley | plastid | 77.63 | 43.7 |
| Solyc06g084220.1.1 | Tomato | plastid | 38.82 | 40.69 |
| PGSC0003DMT400034952 | Potato | cytosol | 39.47 | 40.54 |
| PGSC0003DMT400075166 | Potato | cytosol | 36.18 | 40.44 |
| Solyc09g082150.1.1 | Tomato | cytosol | 28.95 | 40.37 |
| GSMUA_Achr9P25740_001 | Banana | mitochondrion | 42.11 | 39.75 |
| AT4G14830.1 | Thale cress | cytosol | 39.47 | 39.47 |
| PGSC0003DMT400051869 | Potato | plastid | 38.16 | 39.46 |
| KRH77848 | Soybean | mitochondrion | 34.21 | 37.68 |
| PGSC0003DMT400049751 | Potato | mitochondrion | 39.47 | 37.04 |
| PGSC0003DMT400042036 | Potato | cytosol | 40.79 | 36.9 |
| GSMUA_Achr9P10550_001 | Banana | mitochondrion | 42.11 | 36.57 |
| Solyc09g061510.1.1 | Tomato | cytosol | 22.37 | 36.56 |
| Bra023821.1-P | Field mustard | cytosol | 38.82 | 36.42 |
| Solyc09g065370.1.1 | Tomato | mitochondrion | 38.82 | 36.42 |
| CDY34247 | Canola | cytosol | 38.82 | 36.42 |
| CDX98212 | Canola | mitochondrion | 38.82 | 36.2 |
| KRH35512 | Soybean | endoplasmic reticulum, extracellular | 46.05 | 36.08 |
| KRG91317 | Soybean | endoplasmic reticulum, extracellular | 46.05 | 36.08 |
| TraesCS2D01G246400.1 | Wheat | mitochondrion | 40.13 | 35.88 |
| Solyc09g061350.1.1 | Tomato | cytosol | 24.34 | 33.95 |
| KRH71407 | Soybean | mitochondrion | 30.26 | 33.09 |
| Bra039959.1-P | Field mustard | extracellular | 41.45 | 32.81 |
| VIT_07s0151g00830.t01 | Wine grape | cytosol | 35.53 | 32.53 |
| PGSC0003DMT400082124 | Potato | cytosol, mitochondrion | 40.13 | 32.45 |
| AT3G22530.1 | Thale cress | endoplasmic reticulum, extracellular | 41.45 | 31.82 |
| CDY10651 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 40.79 | 31.63 |
| Solyc06g054150.1.1 | Tomato | extracellular, golgi, mitochondrion, plastid | 41.45 | 30.73 |
| CDY10290 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 39.47 | 30.61 |
| KRH32032 | Soybean | mitochondrion | 23.68 | 28.12 |
| VIT_05s0020g03610.t01 | Wine grape | cytosol | 41.45 | 26.14 |
| KRH55262 | Soybean | cytosol, plasma membrane, plastid | 24.34 | 21.39 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G274600.1 | EnsemblPlantsGene:TraesCS4D01G274600 | PANTHER:PTHR33879 | PANTHER:PTHR33879:SF1 | SEG:seg | TIGR:cd06464 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:444885456..444885914
Molecular Weight (calculated)
16267.6 Da
IEP (calculated)
6.251
GRAVY (calculated)
-0.155
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMQQSTMTA SGDGAKRALR RLPHVYSKVL ELPLPADADV RAFEGTTALH FFAACGPMGE VRARLVRIYP GVVKVVVVHA GTGDDEYGDD MELDRWRYRL
101: PEDCCPELAM AGYVDGQLIV TVPKGRGEGG DGTRRCCNGA AGEIGGKLVA VQ
101: PEDCCPELAM AGYVDGQLIV TVPKGRGEGG DGTRRCCNGA AGEIGGKLVA VQ
001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
Arabidopsis Description
Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.