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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:nucleus, plastid
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G22530.1 HORVU4Hr1G019530.1 AT1G35670.1 19130088
AT3G22530.1 HORVU5Hr1G032550.3 AT1G35670.1 19130088
AT3G22530.1 HORVU4Hr1G019530.1 AT4G09570.1 19130088
AT3G22530.1 HORVU5Hr1G032550.3 AT4G09570.1 19130088
AT4G14830.1 HORVU4Hr1G019530.1 AT1G35670.1 19130088
AT4G14830.1 HORVU5Hr1G032550.3 AT1G35670.1 19130088
AT4G14830.1 HORVU4Hr1G019530.1 AT4G09570.1 19130088
AT4G14830.1 HORVU5Hr1G032550.3 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G274600.1 Wheat cytosol 43.7 77.63
TraesCS4A01G030000.1 Wheat cytosol 42.96 76.32
TraesCS4B01G276100.1 Wheat cytosol 42.59 75.66
Zm00001d027742_P001 Maize cytosol 34.44 57.41
Os03t0159900-01 Rice cytosol 33.7 56.17
EER92826 Sorghum cytosol 34.44 55.03
PGSC0003DMT400075166 Potato cytosol 21.48 42.65
GSMUA_Achr9P25740_001 Banana mitochondrion 25.19 42.24
KRH77848 Soybean mitochondrion 21.48 42.03
AT4G14830.1 Thale cress cytosol 23.33 41.45
Solyc06g084220.1.1 Tomato plastid 21.85 40.69
PGSC0003DMT400034952 Potato cytosol 22.22 40.54
Solyc09g082150.1.1 Tomato cytosol 15.93 39.45
Solyc09g065370.1.1 Tomato mitochondrion 23.33 38.89
PGSC0003DMT400049751 Potato mitochondrion 23.33 38.89
PGSC0003DMT400051869 Potato plastid 20.74 38.1
CDX98212 Canola mitochondrion 22.96 38.04
GSMUA_Achr9P10550_001 Banana mitochondrion 24.44 37.71
Bra023821.1-P Field mustard cytosol 22.59 37.65
CDY34247 Canola cytosol 22.59 37.65
Solyc09g061510.1.1 Tomato cytosol 12.96 37.63
PGSC0003DMT400042036 Potato cytosol 23.33 37.5
KRH35512 Soybean endoplasmic reticulum, extracellular 26.67 37.11
KRG91317 Soybean endoplasmic reticulum, extracellular 26.67 37.11
Solyc09g061350.1.1 Tomato cytosol 14.81 36.7
CDY10651 Canola endoplasmic reticulum, extracellular, plasma membrane 25.93 35.71
Bra039959.1-P Field mustard extracellular 25.19 35.42
PGSC0003DMT400082124 Potato cytosol, mitochondrion 24.07 34.57
CDY10290 Canola endoplasmic reticulum, extracellular, plasma membrane 24.81 34.18
KRH71407 Soybean mitochondrion 17.41 33.81
VIT_07s0151g00830.t01 Wine grape cytosol 20.74 33.73
AT3G22530.1 Thale cress endoplasmic reticulum, extracellular 24.07 32.83
Solyc06g054150.1.1 Tomato extracellular, golgi, mitochondrion, plastid 24.81 32.68
VIT_05s0020g03610.t01 Wine grape cytosol 26.3 29.46
KRH32032 Soybean mitochondrion 13.33 28.12
KRH55262 Soybean cytosol, plasma membrane, plastid 13.7 21.39
Protein Annotations
EnsemblPlants:HORVU4Hr1G073230.1EnsemblPlantsGene:HORVU4Hr1G073230PANTHER:PTHR33879PANTHER:PTHR33879:SF1SEG:segUniParc:UPI0002950FC4
UniProt:M0Z4C7MapMan:35.2::::
Description
No Description!
Coordinates
chrchr4H:+:588598564..588599776
Molecular Weight (calculated)
29609.1 Da
IEP (calculated)
9.444
GRAVY (calculated)
-0.657
Length
270 amino acids
Sequence
(BLAST)
001: MPRRSTPGRP NSLPSQARGH AHQHCSSSSY RRPRSLSLSD SSRHLPRRSP GLSFPHATQE PCDTAVLWPL ASQRTYKSRR PAARKAYAST EEPEGRDKGE
101: RDPRIRCLSE DHHLRSYRMG MHQSTTTHGD GPKKVLRRLP HVYSKVLELP LPADADVRAF EGTTALHFFA ACGAMGEVRA RLVRIYPGVV KVVVVHAGTG
201: DGGEDGDDME LDRWRYRLPE DCCPELAMAG YVDGQLIVTV PKGRGEGGDG AWRCGNGAAG EIGGKLVVVQ
Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)
001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ
Arabidopsis Description
Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.