CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	EES09373	AT1G35670.1	19130088
AT3G22530.1	EES16732	AT1G35670.1	19130088
AT3G22530.1	EES09373	AT4G09570.1	19130088
AT3G22530.1	EES16732	AT4G09570.1	19130088
AT4G14830.1	EES09373	AT1G35670.1	19130088
AT4G14830.1	EES16732	AT1G35670.1	19130088
AT4G14830.1	EES09373	AT4G09570.1	19130088
AT4G14830.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027742_P001	Maize	cytosol	80.47	83.95
Os03t0159900-01	Rice	cytosol	71.01	74.07
TraesCS4D01G274600.1	Wheat	cytosol	53.25	59.21
TraesCS4A01G030000.1	Wheat	cytosol	52.66	58.55
TraesCS4B01G276100.1	Wheat	cytosol	50.3	55.92
GSMUA_Achr9P25740_001	Banana	mitochondrion	43.79	45.96
KRH77848	Soybean	mitochondrion	36.69	44.93
EER95920	Sorghum	mitochondrion	46.75	44.63
AT4G14830.1	Thale cress	cytosol	39.65	44.08
Solyc09g082150.1.1	Tomato	cytosol	27.81	43.12
PGSC0003DMT400034952	Potato	cytosol	37.28	42.57
GSMUA_Achr9P10550_001	Banana	mitochondrion	43.79	42.29
PGSC0003DMT400051869	Potato	plastid	36.69	42.18
Solyc06g084220.1.1	Tomato	plastid	36.09	42.07
CDY34247	Canola	cytosol	40.24	41.98
Bra023821.1-P	Field mustard	cytosol	40.24	41.98
PGSC0003DMT400075166	Potato	cytosol	33.73	41.91
CDX98212	Canola	mitochondrion	40.24	41.72
PGSC0003DMT400042036	Potato	cytosol	41.42	41.67
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	45.56	40.96
KRG91317	Soybean	endoplasmic reticulum, extracellular	45.56	39.69
OQU90686	Sorghum	cytosol, mitochondrion	36.69	39.49
PGSC0003DMT400049751	Potato	mitochondrion	37.28	38.89
Solyc09g065370.1.1	Tomato	mitochondrion	37.28	38.89
KRH71407	Soybean	mitochondrion	31.95	38.85
KRH35512	Soybean	endoplasmic reticulum, extracellular	44.38	38.66
VIT_07s0151g00830.t01	Wine grape	cytosol	37.28	37.95
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	42.6	36.36
Bra039959.1-P	Field mustard	extracellular	40.83	35.94
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.42	35.71
Solyc09g061350.1.1	Tomato	cytosol	22.49	34.86
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	42.01	34.63
HORVU4Hr1G073230.1	Barley	plastid	55.03	34.44
Solyc09g061510.1.1	Tomato	cytosol	18.93	34.41
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	39.05	33.67
KRH32032	Soybean	mitochondrion	23.08	30.47
VIT_05s0020g03610.t01	Wine grape	cytosol	43.2	30.29
KRH55262	Soybean	cytosol, plasma membrane, plastid	24.85	24.28

Protein Annotations

EnsemblPlants:EER92826	EnsemblPlantsGene:SORBI_3001G497500	EntrezGene:8059857	PANTHER:PTHR33879	PANTHER:PTHR33879:SF1	ProteinID:EER92826
ProteinID:EER92826.1	RefSeq:XP_002465828.1	SEG:seg	unigene:Sbi.6952	UniParc:UPI0001A82B35	UniProt:C5WWZ6
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:76747998..76749995

Molecular Weight (calculated)

17267.6 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.154

Length

169 amino acids

Sequence
(BLAST)

001: MRIHPASPTV VGGGGGKKDL RRLPHVYSKV LELPLPADTD VEVFEGPDAF HFVAAPPAGG GARGAGVVRV RTVRIHPGVT KVVVQAGDAA EGVADDDDAG
101: DSMELDRWRS RLPEPSCPAM AVAGYVDGQL VVTVPKGPGG GEGGDGGQGE VTWRCSGGGK ISGRLVLVQ

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.