Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075166 | Potato | cytosol | 52.03 | 56.62 |
| PGSC0003DMT400042036 | Potato | cytosol | 56.08 | 49.4 |
| PGSC0003DMT400082124 | Potato | cytosol, mitochondrion | 60.81 | 47.87 |
| AT4G14830.1 | Thale cress | cytosol | 46.62 | 45.39 |
| KRH77848 | Soybean | mitochondrion | 40.54 | 43.48 |
| KRH35512 | Soybean | endoplasmic reticulum, extracellular | 56.76 | 43.3 |
| PGSC0003DMT400049751 | Potato | mitochondrion | 47.3 | 43.21 |
| KRG91317 | Soybean | endoplasmic reticulum, extracellular | 56.08 | 42.78 |
| GSMUA_Achr9P25740_001 | Banana | mitochondrion | 45.95 | 42.24 |
| Bra023821.1-P | Field mustard | cytosol | 45.95 | 41.98 |
| PGSC0003DMT400051869 | Potato | plastid | 41.22 | 41.5 |
| CDY34247 | Canola | cytosol | 45.27 | 41.36 |
| CDX98212 | Canola | mitochondrion | 45.27 | 41.1 |
| TraesCS4A01G030000.1 | Wheat | cytosol | 40.54 | 39.47 |
| TraesCS4B01G276100.1 | Wheat | cytosol | 40.54 | 39.47 |
| TraesCS4D01G274600.1 | Wheat | cytosol | 40.54 | 39.47 |
| GSMUA_Achr9P10550_001 | Banana | mitochondrion | 46.62 | 39.43 |
| TraesCS2B01G259800.1 | Wheat | mitochondrion | 43.24 | 37.65 |
| Bra039959.1-P | Field mustard | extracellular | 48.65 | 37.5 |
| EER92826 | Sorghum | cytosol | 42.57 | 37.28 |
| TraesCS2D01G246400.1 | Wheat | mitochondrion | 42.57 | 37.06 |
| Zm00001d027742_P001 | Maize | cytosol | 39.86 | 36.42 |
| Zm00001d018908_P001 | Maize | mitochondrion | 41.22 | 36.09 |
| CDY10651 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 47.3 | 35.71 |
| Os07t0173100-00 | Rice | mitochondrion | 41.22 | 35.67 |
| OQU90686 | Sorghum | cytosol, mitochondrion | 37.84 | 35.67 |
| AT3G22530.1 | Thale cress | endoplasmic reticulum, extracellular | 47.3 | 35.35 |
| Zm00001d007836_P001 | Maize | mitochondrion | 40.54 | 35.29 |
| CDY10290 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.62 | 35.2 |
| EER95920 | Sorghum | mitochondrion | 41.89 | 35.03 |
| Os03t0159900-01 | Rice | cytosol | 37.84 | 34.57 |
| VIT_05s0020g03610.t01 | Wine grape | cytosol | 47.97 | 29.46 |
| KRH55262 | Soybean | cytosol, plasma membrane, plastid | 31.08 | 26.59 |
| HORVU4Hr1G073230.1 | Barley | plastid | 40.54 | 22.22 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034952 | EnsemblPlantsGene:PGSC0003DMG400013433 | EntrezGene:102591035 | PANTHER:PTHR33879 | PANTHER:PTHR33879:SF3 | PGSC:PGSC0003DMG400013433 |
| RefSeq:XP_006356036.1 | SEG:seg | UniParc:UPI0002954664 | UniProt:M1B1K4 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013433]
Coordinates
chr3:-:294714..295402
Molecular Weight (calculated)
16410.0 Da
IEP (calculated)
9.751
GRAVY (calculated)
-0.164
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPNSIKKLR KLPHVFSKVL ELPIPSNADV EVEENLEFFR FMAKIEQHGE NIRNVRAQTV EIHPGITKIV VRNGSGDGGE AELLMLDQLN VDTWRFRLPT
101: SAKPELATAV FADGELIVTV PKGVNGRGGY GGKDVLVRRR NITLVLVQ
101: SAKPELATAV FADGELIVTV PKGVNGRGGY GGKDVLVRRR NITLVLVQ
001: MKIHPLPRNE NNNNLIHHAR DPTREPGKKL RRLPHIFSRV LELPLKSDAD VAVEESHDCF RFVAETDGGG GGGVRAYMVE IHPGVTKILV RTNGSSSLGL
101: SLDELELDVW RFRLPESTRP ELVTVDCDGD GELIVTVPKI EDNGRDLIVL VQ
101: SLDELELDVW RFRLPESTRP ELVTVDCDGD GELIVTVPKI EDNGRDLIVL VQ
Arabidopsis Description
HSP1HSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.