CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73342
CDX90725
CDY05064
CDY37101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	CDX73342	AT1G35670.1	19130088
AT3G22530.1	CDY37101	AT1G35670.1	19130088
AT3G22530.1	CDX90725	AT4G09570.1	19130088
AT3G22530.1	CDY05064	AT4G09570.1	19130088
AT4G14830.1	CDX73342	AT1G35670.1	19130088
AT4G14830.1	CDY37101	AT1G35670.1	19130088
AT4G14830.1	CDX90725	AT4G09570.1	19130088
AT4G14830.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34247	Canola	cytosol	90.18	90.74
AT4G14830.1	Thale cress	cytosol	65.64	70.39
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	80.37	66.84
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	77.3	64.29
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	77.91	64.14
KRG91317	Soybean	endoplasmic reticulum, extracellular	56.44	47.42
KRH35512	Soybean	endoplasmic reticulum, extracellular	55.21	46.39
KRH77848	Soybean	mitochondrion	39.26	46.38
Solyc09g061350.1.1	Tomato	cytosol	30.67	45.87
GSMUA_Achr9P25740_001	Banana	mitochondrion	44.79	45.34
PGSC0003DMT400034952	Potato	cytosol	41.1	45.27
Solyc09g082150.1.1	Tomato	cytosol	29.45	44.04
PGSC0003DMT400075166	Potato	cytosol	36.2	43.38
GSMUA_Achr9P10550_001	Banana	mitochondrion	46.01	42.86
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	49.08	42.55
Solyc09g061510.1.1	Tomato	cytosol	23.93	41.94
Zm00001d018908_P001	Maize	mitochondrion	42.94	41.42
Zm00001d027742_P001	Maize	cytosol	41.1	41.36
TraesCS2B01G259800.1	Wheat	mitochondrion	42.94	41.18
PGSC0003DMT400042036	Potato	cytosol	42.33	41.07
TraesCS2D01G246400.1	Wheat	mitochondrion	42.33	40.59
EER92826	Sorghum	cytosol	41.72	40.24
Os07t0173100-00	Rice	mitochondrion	41.72	39.77
TraesCS4B01G276100.1	Wheat	cytosol	36.81	39.47
Zm00001d007836_P001	Maize	mitochondrion	41.1	39.41
EER95920	Sorghum	mitochondrion	42.33	38.98
TraesCS4A01G030000.1	Wheat	cytosol	36.2	38.82
TraesCS4D01G274600.1	Wheat	cytosol	36.2	38.82
Os03t0159900-01	Rice	cytosol	38.04	38.27
OQU90686	Sorghum	cytosol, mitochondrion	36.2	37.58
VIT_05s0020g03610.t01	Wine grape	cytosol	53.37	36.1
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	42.94	34.15
KRH55262	Soybean	cytosol, plasma membrane, plastid	30.67	28.9
HORVU4Hr1G073230.1	Barley	plastid	38.04	22.96

Protein Annotations

EnsemblPlants:CDX98212	EnsemblPlantsGene:GSBRNA2T00105681001	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	ProteinID:CDX98212	ProteinID:CDX98212.1
SEG:seg	UniParc:UPI0001FBDAFB	MapMan:35.2	:	:	:

Description

BnaC07g08860D

Coordinates

chrLK031903:-:818680..819531

Molecular Weight (calculated)

18213.0 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.217

Length

163 amino acids

Sequence
(BLAST)

001: MRVHPILNNN TLIHHHHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVSVEEKPDC FRFVAETDGL RGGGGEMTAY MVEIHPGITK IVVRTNGLSL
101: GLSLDELELD VWRFRLPETT RPELVTVACV DGALVVTVPK MVSEEDDDGF GQGVGTGRLV LVL

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.