CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	cytosol
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	KRG91803	AT1G35670.1	19130088
AT3G22530.1	KRH34983	AT1G35670.1	19130088
AT3G22530.1	KRH34984	AT1G35670.1	19130088
AT3G22530.1	KRG91803	AT4G09570.1	19130088
AT3G22530.1	KRH34983	AT4G09570.1	19130088
AT3G22530.1	KRH34984	AT4G09570.1	19130088
AT4G14830.1	KRG91803	AT1G35670.1	19130088
AT4G14830.1	KRH34983	AT1G35670.1	19130088
AT4G14830.1	KRH34984	AT1G35670.1	19130088
AT4G14830.1	KRG91803	AT4G09570.1	19130088
AT4G14830.1	KRH34983	AT4G09570.1	19130088
AT4G14830.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35512	Soybean	endoplasmic reticulum, extracellular	65.32	58.25
KRG91317	Soybean	endoplasmic reticulum, extracellular	62.43	55.67
AT4G14830.1	Thale cress	cytosol	31.79	36.18
GSMUA_Achr9P25740_001	Banana	mitochondrion	33.53	36.02
Solyc09g061350.1.1	Tomato	cytosol	22.54	35.78
KRH77848	Soybean	mitochondrion	28.32	35.51
KRH71407	Soybean	mitochondrion	26.01	32.37
PGSC0003DMT400042036	Potato	cytosol	31.21	32.14
CDY34247	Canola	cytosol	29.48	31.48
Bra023821.1-P	Field mustard	cytosol	29.48	31.48
GSMUA_Achr9P10550_001	Banana	mitochondrion	31.79	31.43
PGSC0003DMT400034952	Potato	cytosol	26.59	31.08
PGSC0003DMT400075166	Potato	cytosol	24.28	30.88
CDX98212	Canola	mitochondrion	28.9	30.67
TraesCS2D01G246400.1	Wheat	mitochondrion	30.06	30.59
TraesCS2B01G259800.1	Wheat	mitochondrion	30.06	30.59
Zm00001d007836_P001	Maize	mitochondrion	29.48	30.0
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	32.37	29.79
Zm00001d018908_P001	Maize	mitochondrion	28.9	29.59
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	33.53	29.29
KRH32032	Soybean	mitochondrion	21.39	28.91
EER95920	Sorghum	mitochondrion	29.48	28.81
Os07t0173100-00	Rice	mitochondrion	28.32	28.66
Bra039959.1-P	Field mustard	extracellular	31.21	28.12
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.21	27.55
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.21	27.55
Solyc09g061510.1.1	Tomato	cytosol	14.45	26.88
OQU90686	Sorghum	cytosol, mitochondrion	24.28	26.75
VIT_05s0020g03610.t01	Wine grape	cytosol	36.99	26.56
Zm00001d027742_P001	Maize	cytosol	24.28	25.93
Os03t0159900-01	Rice	cytosol	24.28	25.93
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	30.64	25.85
EER92826	Sorghum	cytosol	24.28	24.85
TraesCS4A01G030000.1	Wheat	cytosol	21.39	24.34
TraesCS4B01G276100.1	Wheat	cytosol	21.39	24.34
TraesCS4D01G274600.1	Wheat	cytosol	21.39	24.34
Solyc09g082150.1.1	Tomato	cytosol	15.03	23.85
HORVU4Hr1G073230.1	Barley	plastid	21.39	13.7

Protein Annotations

EMBL:ACUP02003940	EnsemblPlants:KRH55262	EnsemblPlantsGene:GLYMA_06G241000	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	ProteinID:KRH55262
ProteinID:KRH55262.1	SEG:seg	UniParc:UPI0006EE065F	UniProt:A0A0R0JL49	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr6:+:39809885..39811628

Molecular Weight (calculated)

19133.6 Da

IEP (calculated)

8.908

GRAVY (calculated)

-0.023

Length

173 amino acids

Sequence
(BLAST)

001: MLELLDIEPC IAPNKGGRRK TKKKNRSFII EKEPLVIVAE LILVVQFSVA FHGGNKIMKV HLVPRKFKIS IQFGGDGGNP MSDAQALLGI AGKKLHCVLE
101: LPFRSDADVA VEEAPNFFRF VAETDEIGDV RAHTMEIHPS VTKIVVKEGG SLELDMCRFR LPESTRPKLT SAV

Best Arabidopsis Sequence Match ( AT4G14830.1 )
(BLAST)

001: MKIHPLPRNE NNNNLIHHAR DPTREPGKKL RRLPHIFSRV LELPLKSDAD VAVEESHDCF RFVAETDGGG GGGVRAYMVE IHPGVTKILV RTNGSSSLGL
101: SLDELELDVW RFRLPESTRP ELVTVDCDGD GELIVTVPKI EDNGRDLIVL VQ

Arabidopsis Description

HSP1HSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V4A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.