Factsheet for TraesCS4B01G276100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT3G22530.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT3G22530.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT3G22530.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT3G22530.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT3G22530.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT3G22530.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT3G22530.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT3G22530.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT3G22530.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT3G22530.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT3G22530.1	TraesCS5D01G122800.1	AT4G09570.1	19130088
AT4G14830.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT4G14830.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT4G14830.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT4G14830.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT4G14830.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT4G14830.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT4G14830.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT4G14830.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT4G14830.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT4G14830.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT4G14830.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT4G14830.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G274600.1	Wheat	cytosol	94.08	94.08
TraesCS4A01G030000.1	Wheat	cytosol	93.42	93.42
Os03t0159900-01	Rice	cytosol	55.26	51.85
EER92826	Sorghum	cytosol	55.92	50.3
Zm00001d027742_P001	Maize	cytosol	53.29	50.0
HORVU4Hr1G073230.1	Barley	plastid	75.66	42.59
Solyc06g084220.1.1	Tomato	plastid	39.47	41.38
Solyc09g082150.1.1	Tomato	cytosol	29.61	41.28
AT4G14830.1	Thale cress	cytosol	40.79	40.79
PGSC0003DMT400034952	Potato	cytosol	39.47	40.54
PGSC0003DMT400075166	Potato	cytosol	36.18	40.44
PGSC0003DMT400051869	Potato	plastid	38.82	40.14
GSMUA_Achr9P25740_001	Banana	mitochondrion	41.45	39.13
PGSC0003DMT400049751	Potato	mitochondrion	40.13	37.65
Solyc09g061510.1.1	Tomato	cytosol	23.03	37.63
CDY34247	Canola	cytosol	39.47	37.04
Bra023821.1-P	Field mustard	cytosol	39.47	37.04
Solyc09g065370.1.1	Tomato	mitochondrion	39.47	37.04
KRH77848	Soybean	mitochondrion	33.55	36.96
PGSC0003DMT400042036	Potato	cytosol	40.79	36.9
CDX98212	Canola	mitochondrion	39.47	36.81
KRG91317	Soybean	endoplasmic reticulum, extracellular	46.05	36.08
KRH35512	Soybean	endoplasmic reticulum, extracellular	46.05	36.08
GSMUA_Achr9P10550_001	Banana	mitochondrion	41.45	36.0
TraesCS2B01G259800.1	Wheat	mitochondrion	40.13	35.88
Solyc09g061350.1.1	Tomato	cytosol	25.0	34.86
Bra039959.1-P	Field mustard	extracellular	42.11	33.33
KRH71407	Soybean	mitochondrion	30.26	33.09
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	40.79	32.98
VIT_07s0151g00830.t01	Wine grape	cytosol	35.53	32.53
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	42.11	32.32
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.45	32.14
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	42.76	31.71
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	40.13	31.12
KRH32032	Soybean	mitochondrion	23.68	28.12
VIT_05s0020g03610.t01	Wine grape	cytosol	40.79	25.73
KRH55262	Soybean	cytosol, plasma membrane, plastid	24.34	21.39

Protein Annotations

EnsemblPlants:TraesCS4B01G276100.1	EnsemblPlantsGene:TraesCS4B01G276100	PANTHER:PTHR33879	PANTHER:PTHR33879:SF1	SEG:seg	TIGR:cd06464
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:555214112..555214570

Molecular Weight (calculated)

16188.4 Da

IEP (calculated)

5.253

GRAVY (calculated)

-0.186

Length

152 amino acids

Sequence
(BLAST)

001: MGMQQSTANA SGDGAKRALR RLPHVYSKVL ELPLPVDADV RAFEGTTALH FFAACGPMGE VRARLVKIYP GVVKVVVVHS GTGDDEDGDD MELDRWRYRL
101: PEDCCPELAM AGYVDGQLIV TVPKGRDEGG DGARKCCNGA AGEIGGKLVA VQ

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.