Factsheet for VIT_05s0020g03610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT3G22530.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088
AT4G14830.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT4G14830.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25740_001	Banana	mitochondrion	39.42	59.01
AT4G14830.1	Thale cress	cytosol	36.1	57.24
VIT_07s0151g00830.t01	Wine grape	cytosol	38.17	55.42
KRG91317	Soybean	endoplasmic reticulum, extracellular	44.4	55.15
GSMUA_Achr9P10550_001	Banana	mitochondrion	39.0	53.71
KRH35512	Soybean	endoplasmic reticulum, extracellular	43.15	53.61
CDX98212	Canola	mitochondrion	36.1	53.37
CDY34247	Canola	cytosol	35.68	53.09
Bra023821.1-P	Field mustard	cytosol	35.68	53.09
PGSC0003DMT400075166	Potato	cytosol	28.22	50.0
KRH77848	Soybean	mitochondrion	28.22	49.28
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	38.17	48.94
Bra039959.1-P	Field mustard	extracellular	38.59	48.44
TraesCS2B01G259800.1	Wheat	mitochondrion	34.02	48.24
PGSC0003DMT400034952	Potato	cytosol	29.46	47.97
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	39.0	47.96
TraesCS2D01G246400.1	Wheat	mitochondrion	33.61	47.65
PGSC0003DMT400042036	Potato	cytosol	32.78	47.02
Solyc09g082150.1.1	Tomato	cytosol	21.16	46.79
Solyc09g061350.1.1	Tomato	cytosol	21.16	46.79
Zm00001d018908_P001	Maize	mitochondrion	32.78	46.75
Zm00001d007836_P001	Maize	mitochondrion	32.78	46.47
EER95920	Sorghum	mitochondrion	33.2	45.2
Os07t0173100-00	Rice	mitochondrion	31.95	45.03
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	36.93	44.95
OQU90686	Sorghum	cytosol, mitochondrion	29.05	44.59
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.1	44.39
Zm00001d027742_P001	Maize	cytosol	29.05	43.21
EER92826	Sorghum	cytosol	30.29	43.2
Os03t0159900-01	Rice	cytosol	28.22	41.98
TraesCS4A01G030000.1	Wheat	cytosol	26.14	41.45
TraesCS4D01G274600.1	Wheat	cytosol	26.14	41.45
TraesCS4B01G276100.1	Wheat	cytosol	25.73	40.79
Solyc09g061510.1.1	Tomato	cytosol	15.35	39.78
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	32.78	38.54
KRH55262	Soybean	cytosol, plasma membrane, plastid	26.56	36.99
HORVU4Hr1G073230.1	Barley	plastid	29.46	26.3

Protein Annotations

ArrayExpress:VIT_05s0020g03610	EMBL:FN595749	EnsemblPlants:VIT_05s0020g03610.t01	EnsemblPlantsGene:VIT_05s0020g03610	EntrezGene:100256202	EntrezGene:LOC100256202
PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	ProteinID:CCB50433	ProteinID:CCB50433.1	RefSeq:XP_002282665	RefSeq:XP_002282665.1
SEG:seg	UniParc:UPI000210A3FF	UniProt:F6HDR2	wikigene:100256202	wikigene:LOC100256202	MapMan:35.2

Description

No Description!

Coordinates

chr5:-:5335769..5337658

Molecular Weight (calculated)

27079.0 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.146

Length

241 amino acids

Sequence
(BLAST)

001: MEGYYGNIKQ HRSDRHPTAS SLIVQGWDSP LPSPKSKPKR VDFHFQLCLC ETMKVHPVQK KRNITFRYEI NSNLSDPLRD RLMGSTQKKL RRLPHIFSRV
101: LELPFKSDAD VAVEESSDCF RFVAVTDGIG DIRAHTVEIH PGVTKIVIRG SDVVELTMDE LELDMWRFRL PATTRPELAS AVYVDGELVV TVPKCVGMEG
201: AGGGGGELRG GVGGRLVVVL CLRWNFVKLV WALCIDKFEV M

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.