CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	EES09373	AT1G35670.1	19130088
AT3G22530.1	EES16732	AT1G35670.1	19130088
AT3G22530.1	EES09373	AT4G09570.1	19130088
AT3G22530.1	EES16732	AT4G09570.1	19130088
AT4G14830.1	EES09373	AT1G35670.1	19130088
AT4G14830.1	EES16732	AT1G35670.1	19130088
AT4G14830.1	EES09373	AT4G09570.1	19130088
AT4G14830.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018908_P001	Maize	mitochondrion	80.79	84.62
Zm00001d007836_P001	Maize	mitochondrion	80.79	84.12
OQU90686	Sorghum	cytosol, mitochondrion	70.06	78.98
Os07t0173100-00	Rice	mitochondrion	75.71	78.36
TraesCS2B01G259800.1	Wheat	mitochondrion	68.36	71.18
TraesCS2D01G246400.1	Wheat	mitochondrion	67.8	70.59
GSMUA_Achr9P25740_001	Banana	mitochondrion	51.98	57.14
GSMUA_Achr9P10550_001	Banana	mitochondrion	55.37	56.0
PGSC0003DMT400049751	Potato	mitochondrion	45.2	49.38
Solyc09g065370.1.1	Tomato	mitochondrion	45.2	49.38
PGSC0003DMT400051869	Potato	plastid	40.68	48.98
Solyc06g084220.1.1	Tomato	plastid	38.98	47.59
AT4G14830.1	Thale cress	cytosol	40.68	47.37
EER92826	Sorghum	cytosol	44.63	46.75
KRH77848	Soybean	mitochondrion	36.16	46.38
KRH71407	Soybean	mitochondrion	34.46	43.88
CDY34247	Canola	cytosol	40.11	43.83
Bra023821.1-P	Field mustard	cytosol	40.11	43.83
VIT_07s0151g00830.t01	Wine grape	cytosol	40.11	42.77
CDX98212	Canola	mitochondrion	38.98	42.33
KRH35512	Soybean	endoplasmic reticulum, extracellular	46.33	42.27
PGSC0003DMT400034952	Potato	cytosol	35.03	41.89
KRG91317	Soybean	endoplasmic reticulum, extracellular	45.76	41.75
PGSC0003DMT400075166	Potato	cytosol	31.64	41.18
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	42.37	39.89
PGSC0003DMT400042036	Potato	cytosol	37.85	39.88
Solyc09g082150.1.1	Tomato	cytosol	24.29	39.45
Solyc09g061350.1.1	Tomato	cytosol	23.73	38.53
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	42.37	37.88
KRH32032	Soybean	mitochondrion	27.12	37.5
Bra039959.1-P	Field mustard	extracellular	38.42	35.42
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.42	34.69
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.85	34.18
Solyc09g061510.1.1	Tomato	cytosol	17.51	33.33
VIT_05s0020g03610.t01	Wine grape	cytosol	45.2	33.2
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	38.42	33.17
KRH55262	Soybean	cytosol, plasma membrane, plastid	28.81	29.48

Protein Annotations

EnsemblPlants:EER95920	EnsemblPlantsGene:SORBI_3002G048800	EntrezGene:8060712	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	ProteinID:EER95920
ProteinID:EER95920.1	RefSeq:XP_002459399.1	SEG:seg	unigene:Sbi.10777	UniParc:UPI0001A830F9	UniProt:C5XAE1
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:4626262..4628364

Molecular Weight (calculated)

18169.6 Da

IEP (calculated)

6.677

GRAVY (calculated)

0.102

Length

177 amino acids

Sequence
(BLAST)

001: MRVHPAPRKR TIAVQRCATA AAAAGAVGGK KLRRLPHIFA KVLELPFAAD ADVSVEEDAA ALRFVAAAVV DVDGFSFSPA GGPRAHAVEI HPGVTKVVVR
101: GLSSGAHDDD DDGAAAAFEL DRWRFRLPPC TRPAMATATY AQGELVVTVP KGAGPDDGDG DAAAAALGGT DRVLVLV

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.