Factsheet for Solyc06g054150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, extracellular

Predictor Summary:

plastid 3
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT3G22530.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT3G22530.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT3G22530.1	Solyc11g018610.1.1	AT4G09570.1	19130088
AT4G14830.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT4G14830.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT4G14830.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT4G14830.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042036	Potato	cytosol	71.71	87.5
Solyc09g061350.1.1	Tomato	cytosol	35.61	66.97
Solyc09g082150.1.1	Tomato	cytosol	29.76	55.96
Solyc09g061510.1.1	Tomato	cytosol	24.88	54.84
Solyc06g084220.1.1	Tomato	plastid	34.63	48.97
AT4G14830.1	Thale cress	cytosol	36.1	48.68
KRH77848	Soybean	mitochondrion	32.68	48.55
Solyc09g065370.1.1	Tomato	mitochondrion	35.12	44.44
GSMUA_Achr9P25740_001	Banana	mitochondrion	34.63	44.1
KRG91317	Soybean	endoplasmic reticulum, extracellular	40.98	43.3
KRH35512	Soybean	endoplasmic reticulum, extracellular	40.98	43.3
CDY34247	Canola	cytosol	34.15	43.21
CDX98212	Canola	mitochondrion	34.15	42.94
TraesCS4B01G276100.1	Wheat	cytosol	31.71	42.76
Os07t0173100-00	Rice	mitochondrion	35.61	42.69
Bra023821.1-P	Field mustard	cytosol	33.66	42.59
EER92826	Sorghum	cytosol	34.63	42.01
Zm00001d027742_P001	Maize	cytosol	33.17	41.98
GSMUA_Achr9P10550_001	Banana	mitochondrion	35.61	41.71
TraesCS4D01G274600.1	Wheat	cytosol	30.73	41.45
TraesCS4A01G030000.1	Wheat	cytosol	30.73	41.45
Os03t0159900-01	Rice	cytosol	32.68	41.36
Zm00001d007836_P001	Maize	mitochondrion	34.15	41.18
TraesCS2B01G259800.1	Wheat	mitochondrion	34.15	41.18
TraesCS2D01G246400.1	Wheat	mitochondrion	33.66	40.59
Zm00001d018908_P001	Maize	mitochondrion	33.17	40.24
Bra039959.1-P	Field mustard	extracellular	36.59	39.06
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	37.56	38.89
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.07	38.78
EER95920	Sorghum	mitochondrion	33.17	38.42
OQU90686	Sorghum	cytosol, mitochondrion	29.27	38.22
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	35.61	37.24
VIT_05s0020g03610.t01	Wine grape	cytosol	38.54	32.78
KRH55262	Soybean	cytosol, plasma membrane, plastid	25.85	30.64
HORVU4Hr1G073230.1	Barley	plastid	32.68	24.81

Protein Annotations

EnsemblPlants:Solyc06g054150.1.1	EnsemblPlantsGene:Solyc06g054150.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33879
PANTHER:PTHR33879:SF3	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002765983	UniProt:K4C6A2	MapMan:35.2

Description

No Description!

Coordinates

chr6:+:36970063..36970680

Molecular Weight (calculated)

23093.0 Da

IEP (calculated)

7.059

GRAVY (calculated)

-0.159

Length

205 amino acids

Sequence
(BLAST)

001: MQLSIFRSGV NRIPNCPIGI LNLINICLLL IVSIPTIQGM RMHPLSLNPK IGRIDSNFSQ QQQHVPNSAM KKLRRLPHVF NYFLELPFRS DADVAVEEKE
101: GFFRFVAKIE LGGAWNGQVR AQAVEIYPGV TKIVVRKGNG DGDDDEKLNV DTWRYRLPAS TMPEMATAVF VDGELVVTVP KDDHGHGEFD NRGVWRDVDQ
201: LVLVQ

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.